F05603

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05603

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05603

Determination of introduced cDNA(s)

  • RAFL09-06-F17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-F17 - Resource: pda09616

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-F17 - full reading 
    TGAAGCGGAG AGAGAGAGAG AGACAGAGAG AGATTCAAAA ATCCGATTCC 
    AGATCCATTC CTGGGCAAAC AAAGGTTGGT GTTTCTCTAA TCTCAAAGCT 
    TTTTTCAAAT TCGGAAAAAG CAAATCGTGG GAAGAGATTC ATCTTCTCTC 
    TGTGCGTTCA TCGGATCTCG GAGCTTTTGG TTCGTCGTCA ATGGCGGAAG 
    AGACGGAGAA AAAGTACATT ACGAACGAAG ATCTTAAAAA ACACAACAAA 
    TCTGGAGATC TATGGATCGC GATTCAAGGC AAGGTCTACA ACGTCTCCGA 
    TTGGATTAAA ACTCATCCCG GAGGCGACAC GGTGATTCTC AATCTCGTTG 
    GTCAAGACGT CACCGATGCT TTCATCGCAT TTCATCCCGG AACCGCTTGG 
    CACCATCTCG ACCATCTCTT CACCGGTTAC CACATCAGAG ATTTCCAAGT 
    CTCCGAAGTC TCACGCGATT ACCGTCGTAT GGCTGCCGAG TTTCGTAAAC 
    TCGGTCTCTT CGAAAACAAA GGTCACGTTA CTCTCTACAC TCTAGCCTTC 
    GTCGCCGCCA TGTTCCTCGG AGTTCTCTAC GGTGTTTTGG CTTGTACCTC 
    CGTCTTCGCT CACCAAATCG CCGCCGCGCT TCTCGGTCTC CTCTGGATCC 
    AGAGCGCTTA CATAGGTCAC GATTCTGGTC ATTACGTTAT CATGTCGAAC 
    AAATCTTATA ACAGATTCGC TCAGCTTCTC TCCGGTAACT GTCTCACCGG 
    AATCTCAATC GCGTGGTGGA AATGGACTCA CAATGCTCAT CATCTAGCTT 
    GTAACAGCCT CGATTACGAT CCAGATCTAC AACACATCCC TGTCTTCGCC 
    GTCTCCACCA AATTCTTCTC CTCATTGACC TCGAGATTCT ACGATCGGAA 
    ACTCACGTTT GATCCAGTCG CGAGATTCTT AGTCAGCTAT CAACACTTTA 
    CTTATTATCC AGTTATGTGC TTTGGAAGAA TCAATCTCTT CATTCAAACG 
    TTTCTCTTGC TCTTCTCCAA ACGTGAAGTA CCAGATCGTG CTTTAAACTT 
    CGCCGGAATC TTAGTCTTCT GGACTTGGTT CCCACTCTTA GTCTCATGTC 
    TACCAAACTG GCCTGAGAGA TTCTTCTTCG TCTTCACAAG CTTCACCGTC 
    ACGGCGCTTC AACACATTCA ATTCACGCTT AACCATTTCG CTGCTGATGT 
    CTACGTTGGT CCACCCACCG GTAGCGACTG GTTCGAGAAG CAAGCGGCGG 
    GAACAATCGA TATCTCTTGT AGATCATACA TGGATTGGTT CTTTGGTGGA 
    TTACAGTTTC AGCTTGAGCA TCATTTGTTC CCTCGCTTAC CTCGTTGCCA 
    TCTCCGGAAA GTTTCTCCGG TGGTTCAAGA GCTTTGCAAG AAGCATAATC 
    TTCCGTATAG GAGTATGTCG TGGTTTGAAG CAAATGTGTT GACCATTAAC 
    ACTTTGAAGA CAGCAGCTTA TCAAGCTAGA GACGTGGCTA ATCCGGTGGT 
    TAAGAACTTG GTTTGGGAAG CTTTGAATAC TCATGGCTAA ATGATTTTAA 
    TCAAAACAAA ATATGCTTTT GTTTGGGTTA AATTTGATGT GTTGTTTTTA 
    TGCTTTATTG AATCTTTGAA TTTCGTTTTG TTACTTACTT ACATGGAAGA 
    GATGTTTTAG ATCGAAATTG AATCGAGATT TGATTTTTTT ATTAGACAAC 
    TCTTCGTATC GTAATGATTT ATTAATAATA TTATTTTGAA TTT

    Gene models with high sequence identity

    1. AT3G61580.1 [+] show detail - Fatty acid/sphingolipid desaturase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Cytochrome b5 22.721
    superfamily Cytochrome b5 4.1e-27
    HMMPanther FATTY ACID DESATURASE 2 7.1e-152
    HMMPfam Fatty acid desaturase, type 1 7.1e-34
    HMMPfam Cytochrome b5 6.7e-23
    Gene3D Cytochrome b5 1.4e-22
    HMMPIR Fatty acid/sphingolipid desaturase 2.3e-148

    See the detailed result >

    AT3G61580.1

    Model type
    Protein coding
    Short Description
    Fatty acid/sphingolipid desaturase
    Computational Description
    Fatty acid/sphingolipid desaturase; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT2G46210.1); Has 5416 Blast hits to 5306 proteins in 857 species: Archae - 2; Bacteria - 1062; Metazoa - 955; Fungi - 1609; Plants - 915; Viruses - 2; Other Eukaryotes - 871 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR