F05608

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05608

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05608

Determination of introduced cDNA(s)

  • RAFL06-89-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E01 - Resource: pda07784

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E01 - full reading 
    GTGAATGCGT CATTGAAACG CCATTATCCG CCGTGCTAAT CTGAATCTCC 
    TCCCCCGTCG GAAAAAATGG CCACTGGTGG AAAAGTCTCC TTCAAAGTCA 
    CTCTGACTTC GGATCCTAAG CTTCCTTTCA AAGTTTTCAG CGTACCAGAA 
    GGAGCTCCGT TCACGGCGGT TCTGAAATTC GCAGCAGAAG AGTTCAAGGT 
    TCCTCCACAA ACCAGCGCCA TCATCACTAA TGATGGGATC GGGATCAATC 
    CTCAACAGAG TGCAGGAAAC GTTTTTCTGA AGCACGGATC TGAACTAAGA 
    TTGATCCCGC GTGATAGAGT TGGAGCTGTG TTTGTGATGG ATCCATAGAT 
    GATGTGTAAG CAATGATTAA AAACTCAGTT CCAAAAAAAA ACATAATAAT 
    ATACTGAAAT GCTTATGTAC AACTTCGTTG AATAAATATG TAATCGTCAC 
    AATTGAAGTG AGTTGAATTT GGTCAAGTTA TATGTCTGTT ATAATTCATA 
    TTT

    Gene models with high sequence identity

    1. AT1G77710.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 ...
      E-value: 0; Score: 99.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-like 2.9e-39
    Gene3D no description 6.6e-42
    HMMPIR Ubiquitin-like, Ufm1 2.3e-59
    HMMPfam Ubiquitin-like, Ufm1 2.1e-52

    See the detailed result >

    AT1G77710.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR