F05615

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05615

Determination of introduced cDNA(s)

  • RAFL05-08-C13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-C13 - Resource: pda01086

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-C13 - full reading 
    AGAAATCGAT TTCCAAAATG GCTCTTGTTC AATCCAGAAC TTTTCCACAC 
    CTCAACACTC CGTTATCGCC GATTCTATCC TCCCTCCATG CTCCGTCTTC 
    TCTCTTTATC CGGAGGGAAA TCCGACCGGT AGCCGCGCCG TTCTCCTCCT 
    CCACCGCCGG AAACTTGCCC TTCTCGCCGT TGACGCGTCC GCGAAAGCTT 
    CTCTGTCCTC CGCCTCGCGG CAAGTTTGTC AGAGAAGATT ATCTTGTGAA 
    GAAATTGTCA GCTCAAGAAC TTCAGGAACT GGTGAAAGGA GATAGGAAGG 
    TGCCGTTGAT TGTTGATTTT TATGCGACAT GGTGTGGACC TTGTATCTTG 
    ATGGCCCAGG AACTAGAAAT GCTTGCAGTA GAGTATGAGA GCAATGCAAT 
    AATCGTGAAA GTTGATACAG ATGATGAGTA CGAGTTTGCA CGCGACATGC 
    AGGTTCGAGG GTTACCTACA TTATTCTTCA TCAGTCCTGA CCCAAGCAAA 
    GATGCAATCA GGACAGAAGG GCTAATTCCG TTACAGATGA TGCACGATAT 
    CATTGACAAC GAGATGTGAA GTTTTTACTG AGAAAACACT TTTGTACTCT 
    TTATGATTTG ATTAGAATCG CCGTAATTTA GGATTGGTAC CGTGTTGTTT 
    GCATTTGAGA TGTGGTAAGA ATGTCTTCTA GTTTCATAGA TGAAGAATGT 
    AGTCTTAAGA CATTTGTTTG TATGCAGTGT TCGTTTCAAT ACCTAAGTGA 
    AAAGGTTAGA GCTGTTGATC TGGTCGGATC CAAGTTATGT GGCACATCGA 
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G06730.1 [+] show detail - Thioredoxin z
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 12.892
    HMMPfam Thioredoxin domain 1.2e-19
    superfamily Thioredoxin-like fold 2.3e-26
    FPrintScan Thioredoxin-like subdomain 4.3e-05
    FPrintScan Thioredoxin-like subdomain 4.3e-05
    FPrintScan Thioredoxin-like subdomain 4.3e-05
    HMMPanther THIOREDOXIN T,DEADHEAD(D.MELANOGASTER)-RELATE 6.9e-32
    HMMPanther Thioredoxin, core 6.9e-32
    Gene3D Thioredoxin fold 1.7e-20

    See the detailed result >

    AT3G06730.1

    Model type
    Protein coding
    Short Description
    Thioredoxin z
    Curator Summary
    Encodes a plastidial thioredoxin (TRX) isoform that defines a branch of plastidial TRXs lying between x- and y-type TRXs and thus was named TRX z. Possesses disulfide reductase activity in vitro. TRX z was previously named as Trx p (thioredoxin putative and plastidic) before its thioredoxin activity was confirmed (Meng et al., PNAS 2010, 107:3900). Knockout mutant of TRX z has a severe albino phenotype and is inhibited in chloroplast development. Two fructokinase-like proteins (FLN1 and FLN2), members of the pfkB-carbohydrate kinase family, are potential TRX z targets.
    Computational Description
    Thioredoxin z (TRX z); FUNCTIONS IN: protein-disulfide reductase activity, protein disulfide oxidoreductase activity; INVOLVED IN: plastid organization, cell redox homeostasis; LOCATED IN: thylakoid, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y2 (TAIR:AT1G43560.1); Has 15064 Blast hits to 14650 proteins in 2900 species: Archae - 204; Bacteria - 8491; Metazoa - 1613; Fungi - 754; Plants - 1355; Viruses - 0; Other Eukaryotes - 2647 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR