F05641

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05641

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05641

Determination of introduced cDNA(s)

  • RAFL09-38-D06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-38-D06 - Resource: pda06176

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-38-D06 - full reading 
    ATCATCATCA TCATCTTCTT CAACCTTGTC TCGATCCAAA ATTTCATCTT 
    TTACCAAAAC TATTACAATA TCCCTCACTC TACTTGTAAA GCTTCAATCT 
    TCTTCACTTC TCAACAAACA GATAAACAAA AAGCTTCAAT CTTTGATACT 
    TTCTCGATGG AACTTATCCC CAATCTTCCC GACGACGTTG CTCGCGAGTG 
    TCTCCTTCGC TCCTCCTACC AACAGTTCCC TGTCATCGCC TCCGTTTGCA 
    GAGCCTGGAA CCGTGAAGTC TCTCTCTCTC AGTTTTTACA TCAGCGAAAA 
    GCTTCACGCC ATAGCCAAGA GCTTCTTATT CTGTCTCAGG CTCGTGTCGA 
    CCCCGCTGGA TCCGGAAAGA TCATCGCTAC GCCTGAATAC CGGATCTCTG 
    TTCTCGAATC CGGGTCGGGT CTTTGGACGG AGCTTCCTCC GATTCCTGGT 
    CAAACCAAAG GACTTCCTCT GTTCTGCAGA TTGGTTTCCG TTGGATCCGA 
    TCTTATTGTC TTGGGTGGGC TTGACCCGAT TACGTGGCAG GCCCATGATT 
    CGGTATTCGT CTTCAGTTTT CTCACTTCCA AATGGCGCGT GGGGGCAACC 
    ATGCCAGGTG TACGGAGGTC CTTCTTCGGA TGCGCTTCGG ATTCGGATCG 
    GACGGTGCTG GTTGCGGGTG GACACAACGA AGAGAAATGT GCGCTTACGT 
    CAGCTATGGT GTATGACGTG TCAGAAGACA AGTGGACGTT TTTGCCGGAT 
    ATGGCGCGGG AACGAGACGA GTGCAAAGCG GTATTCCATG CTGGCAGATT 
    CCACGTCATC GGTGGATATG CCACTGAGGA ACAGGGGCAG TTTAGTAAAA 
    CAGCCGAATC GTTCGATGTG TCTACGTGGG AGTGGGGTCC ACTTACGGAG 
    GACTTCCTCG ACGACACCGG CGATACCGTT AGCCCTCCGA CCTGCGTCGC 
    CGGTGGGGAT TTGTACGCGT GCTGGGGTGG CGATGTGATG ATGTTTCTAA 
    ATGACAAGTG GCAAAAGGTG GGCCAGATCC CTGCTGATGT GTACAATGTT 
    ACTTACGTAG CGGTGAGGCC CGGGATGCTG ATTGTGATCG GCAACGGGAA 
    GGCGTTGGCT GGATACGGTG AAGCCACCGT AGGGTATATA TGTGATTTAA 
    GTAGCTCACG ATGGGTAAAA TTGGAAACAC ACGGTGGTCA TGTTCAAGCT 
    GGCTGCTTCT TGGAGGTCTA ATGGAAAACC TATTCATCTT TGGAGTTTGA 
    ACCTAAACCG CAACAAACCA ATGGGTAGTC TCGTGTGTCA ATCTACAAAT 
    CTTTTCATGA ACAACAAAAT AAAGAAATAT TGTATTTATT CAGTGTCACT 
    TTACCAAATA TTTATGTTCT CTATACAAAA CTTCAAAAGG AAGATTTGAA 
    CTTTTAGGTT CTCTATACAA AACTGATCCA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT1G80440.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Kelch-type beta propeller 3.9e-34
    HMMSmart Kelch repeat type 1 0.00082
    HMMSmart Kelch repeat type 1 9.5e-05
    superfamily Galactose oxidase/kelch, beta-propeller 3.4e-44
    HMMPanther KELCH-RELATED 4.7e-15
    HMMPanther Kelch related 4.7e-15
    HMMPfam Kelch repeat type 1 5e-05
    HMMPfam Kelch repeat type 1 3.2e-07

    See the detailed result >

    AT1G80440.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR