F05647

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05647

Determination of introduced cDNA(s)

  • RAFL06-68-A19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-A19 - Resource: pda03289

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-A19 - full reading 
    AAAATCCCCA CACAGTTCGA TGGGAAGACT TTGGGAATCA CTGCCCGTGA 
    TTCTTCTACT CTTAGTTCTT CTTCTTCATC AATCAGTCTC TCAGGGGTTT 
    GAAGAATCTG AATCTACTAG ATTGGTTAAC GAAGAAGTAG AAGTTAGTAA 
    TGCTCCAGAA ATACATTGTT CCCGAGAAAG AAGTCGAGCA GCTTGGCAGA 
    TTATACAAGA TTATTTGACG CCATTTGTGG AACGGGAAAG ATATGAAATT 
    CCAAAAAATT GTAGGCTGCA TCCTGATAAT GATTTATACA GAGATCAGGA 
    ACATCATAAG GTTCATGTTG ATGTCTTCGA ATGGAAATGT GGTTACTGCA 
    AGAAAAGTTT CAATGATGAG AAATTTCTTG ACAAGCATTT CAGTACTAGA 
    CATTATAATC TTTTAAATAC GACTGATACA AAGTGTTTAG CCGACCTGTG 
    TGGTGCATTG CATTGTGACT TTGTATTGAG CTCTAAGAAA CCCAAGAGCA 
    AGTGCAACCC TCCTGCTGTT GCCAAAAACC GTCATCTCTG CGAGAGCGTT 
    GCCAATAGTT GTTTCCCAGT GAGTCAAGGT CCCTCAGCTA GTCGTCTTCA 
    TGAACACTTT TTGCGCCAAT TCTGTGATGC TCATACCTGC ACTGGAAATG 
    ATAAACCCTT TCCTAGAGGA GGCAAGAAGA AATCGGGTGT CTTCTACCTC 
    GCCATTTCAA TATTGACCTT GATGCTACTC CCACTCTTTT ATCTTCTAGT 
    CTTCTTACAT CAAAGAGAAA AGAGAAGCGG AACACAAGAT TTGCGTCGTA 
    TTATAAAATC TGGAAAAAAA ACAAAACCGT CATAAGATGG TAAGCTTCAA 
    ACTGCTCTTG AGATACAGGA TGTTCAAATC CGATATTGGT TTGGTGAATC 
    ACAAATCTTC CTCATTACTT CTCCATCTCA GACCTTTCCT CATTTGGTGT 
    TTCTCAAACC AGAGACTTAT GGATTCCAAA CGAGAGTATT TCTATGTGGT 
    TATGAAGCTA GTTGCTATGG ATATCAGATG GATTACATAG ACAAATGATT 
    TTTCTGTAAG CTTGTAAAAA CAGATGATTC CTTCCACAAA ATAGGAATAG 
    TGATTAGATT TTTCTCTGTA ATTTTATCGA ATCTTCATAC ATATCAATGA 
    TAACATCAAG GTTGAAACAC AGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G63280.1 [+] show detail - C2H2-like zinc finger protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, C2H2-type 8.621
    HMMPanther ZINC FINGER PROTEIN-RELATED 7.5e-121
    PatternScan Zinc finger, C2H2-type 0

    See the detailed result >

    AT5G63280.1

    Model type
    Protein coding
    Short Description
    C2H2-like zinc finger protein
    Computational Description
    C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR