F05834

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05834

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05834

Determination of introduced cDNA(s)

  • RAFL09-10-A12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-10-A12 - Resource: pda05323

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-10-A12 - full reading 
    CTCTCTTCTT TTTTTCTCTC TTTCTCATAA CAACAAAAAA ACAAAAAAAA 
    AACCTAATTA GTTTTTTCTT TCTGCAGAGA TTATGGAGGT ACCGGTGATT 
    AATAGAATAA GAGATTTCGA AGTTGGTATA AACTCGATTA ATGATCCTTC 
    GTTTCTTTCT CGATCTGTTG CTGTTTCCGG AATCGGAAAG CTACACCAAG 
    CTTATGGTTT TTGGAAATGG GGAGCTTTGA TTATCGCATT TCTAGCTTAT 
    TTCACCAACT TTGTTAGTAA ACTCAACAGT CTAGTTGTTA GGTTAAGAAA 
    AATAGATGTC TCTGTTTCCT CTCCAACTCT TTTTGATGAT TACGATAGCG 
    ATTCCGATGT TTCTTGTTCC TCTACCGTCT CCTCTGACGA TGAAAAAGAC 
    GAAGAAGATG AGGCTGATGA TGAAGATGAG GATGTTGACT CGATCTTTAA 
    TCGAAGACGA GTCAACGGAG GTTTCCGCGT TAGAGGATCT GATTATTACG 
    ATGATGATGA TGATCAGGGA GACAATGGTA ATTGCACATG GATGGGGAGG 
    CGATATAGTG GTAGTTTTGG AGATTTGTTC TCATGGCCTG ATCTTGGTGG 
    GATTGGTTCG AGTGGAGTCG TGAAGCTTTG GGATCATTTA GATATCGATG 
    GCGATGATCA TGAGAATGTT GTGGCAACGT TTCTCAAGAA CTATAACTCA 
    ACCTCGTCAC CGTTTTTTTG GGCGGCGGAG AAAAAAGGTG TTGACGCCGT 
    TAAAGTGAAG GCGTGTGATC CACGCGCCGG TTTTCGGATG CCGGCTTTGC 
    TCGCGGAGTG GAGGCAGCCG GGGCGGTTGT TAGGGAATAT AATCGGAGTT 
    GATACCGGTG GTGTGGAGAA AGTATACGTC AGGGATGATG TTAGCGGAGA 
    GATAGCCGTG GGAGATTTGA GGAAGTTTAA CGGTGTGTTG ACGGACTTGA 
    CGGAATGTGA GGCTGAGACT TGGTGGGACG CTGACGTCCT TATCTCGGGC 
    TGATGGAATC CTTGACGAGA GAAAATATTG GTTGGGACGG TTTTGTCTTA 
    AAGTTAAGAG GACGGACGAA AGATTCAACG CCAAAAAGAA GTGTTAAAGA 
    TTAATGAGAA CGACGCAACG TTTTGTAAAT AATTTGTCTG TTTGCTTCTC 
    TGCGATTTTT ATTTTAAAAT TTTAGTTTTG ATTGAATAAA AATCAGCGTC 
    AGATTAATAA AAGTGTTTGT GTGTTTGGTC GGTTAC

    Gene models with high sequence identity

    1. AT1G68440.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G68440.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR