F05901

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05901

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F05901

Determination of introduced cDNA(s)

  • RAFL06-08-E07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-E07 - Resource: pdz87557

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-08-E07 - 5 prime EST 
    GGTTTTGGTA GCTCAGACTC AGAGAGTCAC AAAGTGTGTG TAGCAGCAAT 
    GGCGTCTGTT GCTTCTTCAA CTACTCTCAT CTCTTCTCCC TCTTCTAGGG 
    TTTTTCCAGC AAAGTCTTCA CTTTCCTCTC CATCTGTTTC TTTCCTTCGA 
    ACCCTTTCTT CTCCTTCCGC ATCTGCTTCT CTCCGCTCCG GATTTGCTCG 
    ACGCTCTTCC CTCAGCTCCA CTTCTCGTCG GAGCTTTGCT GTCAAAGCCC 
    AGGCCGATGA TCTTCCACTG GTTGGAAACA AGGCGCCTGA TTTTGAGGCA 
    GAGGCTGTGT TTGATCAAGA GTTCATCAAG GTTAAGCTCT CTGATTACAT 
    TGGAAAGAAG TATGTGATTC TCTTTTTCTA CCCATTGGAC TTTACTTTCG 
    TCTGCCCAAC AGAGATTACT GCCTTCAGTG ACCGGCATTC AGAATTTGAG 
    AAGTTGAACA CCGAAGTATT AGGTGTTTCT GTCGATAGTG TGTTCTCTCA 
    CCTTGCATGG GTCCAAACAG ACAGGAAATC TGGAGGGCTT GGTGATCTGA 
    ACTATCCCCT TATTTTCAGA TGTCCCTAAA TCAATCTCAA AGTCGTTCGG 
    AGNGCTCATC CNTGATCAGG GAATAGCACT GAGAGGACTT TTCATATTCG 
    ACAAGGAANG AGGGATCCAA CATCCC

    Gene models with high sequence identity

    1. AT3G11630.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 0; Score: 98.96

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-08-E07 - 3 prime EST 
    AGCGGAAAAA GTTTTTTATT ATAATTTTGG GGACAAAGTG AGAATCAAAC 
    AAAGGATTGT TTTAGCAGTA CAAGAAAAAA AACTCTGCTC ACATATAACA 
    AAGATTGTAC CTCTTTTGCT ATCATAGTAG AGTTTCTAAA TAGCCTGAGA 
    AGTACTCTTT GCTGAGTTTT GGGTCGGGTT TCATTGACTT CTCACCCGGC 
    TTCCATCCTG CTGGGCAGAC TTCATCCGGG TTTTCCTGGA TGTACTGTAA 
    TGCCTGGAGG GTTCTCATTG TCTCATCAAC GCTTCGGCCA ATACCAAGAT 
    TGTTGATGGT GGAATGTTGG ATCACTCCTT CCTTGTCGAT TATGAAAAGT 
    CCTCTCAGTG CTATTCCCTG ATCATGGATG AGCACTCCGA ACGACTTTGA 
    GATTGATTTA GTGACATCTG AAATAAGGGG ATAGTTCAGA TCACCAAGCC 
    CTCCAGATTT CCTGTCTGTT TGGACCCATG CAAGGTGAGA GAACACACTA 
    TTCGACAGAA ACACCTAATA CTTCGGTGGT CAACTTCTCA AATTCTGA

    Gene models with high sequence identity

    1. AT3G11630.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 0; Score: 99.08

    AT3G11630.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Curator Summary
    Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.
    Computational Description
    Thioredoxin superfamily protein; FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 16794 Blast hits to 16794 proteins in 2739 species: Archae - 621; Bacteria - 10920; Metazoa - 1157; Fungi - 359; Plants - 398; Viruses - 0; Other Eukaryotes - 3339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR