F05903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05903

Determination of introduced cDNA(s)

  • RAFL05-18-K12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-K12 - Resource: pdz87521

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-K12 - 5 prime EST 
    GATAACACAC ACTCGCTTGT TCACGCACAA CAAAAAGCAA GAATATATAC 
    CACTTTGTGA ACTTCAGAGA TCCTATAGCA ATGGCGAACC TACCGATTCT 
    TTTGGATTAC TGGCCAAGTA TGTTCGGGAT GAGGGCTAGA GTTGCGTTGC 
    GAGAGAAAGG TGTTGAGTTT GAATACAGAG AGGAAGATTT CTCGAACAAG 
    AGCCCTTTAC TCCTCCAGAG TAATCCCATT CACAAGAAAA TCCCGGTTCT 
    GGTCCACAAC GGTAAACCGG TATGTGAATC TCTTAACGTT GTCCAGTACG 
    TCGACGAGGC TTGGCCCGAG AAGAACCCGT TCTTCCCTTC CGATCCTTAC 
    GGGAGAGCTC AGGCTCGATT CTGGGCTGAT TTCGTGGACA AGAAGTTCAC 
    CGACGCCCAA TTCAAGGTAT GGGGGAAGAA AGGTGAGGAA CAAGAAGCAG 
    GCAAGAAGGA ATTTATTGAG GCAGTGAAGA TTCTTGAATC TGAGCTAGGA 
    GATAAACCTT ACTTTGGTGG AGATAGCTTT GGGTATGTAN ACATTTCCTT 
    GATTACATTC TCGAGTTGGT TCCAAGCCTA TGANAAGTTT GGTAACTTTA 
    GCATCGGAGT CAGAGAGTNC GAAACTGATC G

    Gene models with high sequence identity

    1. AT1G78370.1 [+] show detail - glutathione S-transferase TAU 20
      E-value: 0; Score: 99.37

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-K12 - 3 prime EST 
    CGAAACAAAT TTTATTTAAA TTCCATACTT AGGATGCATA AAAACCACAA 
    CACACATTCA CTAAGGCTCT CTCGCATTAT TAGGGGAAAA AAAAAAACAA 
    AGACAAAAAC AGAACACAGC TTAGCAACAA GAGAACAACA AGATTATTCA 
    AATCAGAGAT TGTTCTTCCT ATACTCAGCA GCATATGCAA CAATCTTCTC 
    AGAGTCAGGG AGAGACTTAG ACACACTCTC TTTCTCCATG CACCGCTTTG 
    CCCAAGCGAT CAGTTTCGGA CTCTCTGACT CGATGCTAAA GTTACCAAAC 
    TTCTCATAGG CTTGGAACCA ACTCGAGAAT GTAATCAAGG AAATGTCTAC 
    ATACCCAAAG CTATCTCCAC CAAAGTAAGG TTTATCTCCT AGCTCA

    Gene models with high sequence identity

    1. AT1G78370.1 [+] show detail - glutathione S-transferase TAU 20
      E-value: 0; Score: 100.00

    AT1G78370.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 20
    Curator Summary
    Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase TAU 20 (GSTU20); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 19 (TAIR:AT1G78380.1); Has 7354 Blast hits to 7257 proteins in 1180 species: Archae - 0; Bacteria - 3234; Metazoa - 910; Fungi - 219; Plants - 2135; Viruses - 0; Other Eukaryotes - 856 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR