F05903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05903

Determination of introduced cDNA(s)

  • RAFL05-18-K12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-K12 - Resource: pdz87521

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-K12 - 5 prime EST
    GATAACACAC ACTCGCTTGT TCACGCACAA CAAAAAGCAA GAATATATAC 
    CACTTTGTGA ACTTCAGAGA TCCTATAGCA ATGGCGAACC TACCGATTCT
    TTTGGATTAC TGGCCAAGTA TGTTCGGGAT GAGGGCTAGA GTTGCGTTGC
    GAGAGAAAGG TGTTGAGTTT GAATACAGAG AGGAAGATTT CTCGAACAAG
    AGCCCTTTAC TCCTCCAGAG TAATCCCATT CACAAGAAAA TCCCGGTTCT
    GGTCCACAAC GGTAAACCGG TATGTGAATC TCTTAACGTT GTCCAGTACG
    TCGACGAGGC TTGGCCCGAG AAGAACCCGT TCTTCCCTTC CGATCCTTAC
    GGGAGAGCTC AGGCTCGATT CTGGGCTGAT TTCGTGGACA AGAAGTTCAC
    CGACGCCCAA TTCAAGGTAT GGGGGAAGAA AGGTGAGGAA CAAGAAGCAG
    GCAAGAAGGA ATTTATTGAG GCAGTGAAGA TTCTTGAATC TGAGCTAGGA
    GATAAACCTT ACTTTGGTGG AGATAGCTTT GGGTATGTAN ACATTTCCTT
    GATTACATTC TCGAGTTGGT TCCAAGCCTA TGANAAGTTT GGTAACTTTA
    GCATCGGAGT CAGAGAGTNC GAAACTGATC G

    Gene models with high sequence identity

    1. AT1G78370.1 [+] show detail - glutathione S-transferase TAU 20
      E-value: 0; Score: 99.37

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-K12 - 3 prime EST
    CGAAACAAAT TTTATTTAAA TTCCATACTT AGGATGCATA AAAACCACAA 
    CACACATTCA CTAAGGCTCT CTCGCATTAT TAGGGGAAAA AAAAAAACAA
    AGACAAAAAC AGAACACAGC TTAGCAACAA GAGAACAACA AGATTATTCA
    AATCAGAGAT TGTTCTTCCT ATACTCAGCA GCATATGCAA CAATCTTCTC
    AGAGTCAGGG AGAGACTTAG ACACACTCTC TTTCTCCATG CACCGCTTTG
    CCCAAGCGAT CAGTTTCGGA CTCTCTGACT CGATGCTAAA GTTACCAAAC
    TTCTCATAGG CTTGGAACCA ACTCGAGAAT GTAATCAAGG AAATGTCTAC
    ATACCCAAAG CTATCTCCAC CAAAGTAAGG TTTATCTCCT AGCTCA

    Gene models with high sequence identity

    1. AT1G78370.1 [+] show detail - glutathione S-transferase TAU 20
      E-value: 0; Score: 100.00

    AT1G78370.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 20
    Curator Summary
    Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase TAU 20 (GSTU20); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 19 (TAIR:AT1G78380.1); Has 7354 Blast hits to 7257 proteins in 1180 species: Archae - 0; Bacteria - 3234; Metazoa - 910; Fungi - 219; Plants - 2135; Viruses - 0; Other Eukaryotes - 856 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR