F05912

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05912

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05912

Determination of introduced cDNA(s)

  • RAFL05-03-J07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-03-J07 - Resource: pda02430

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-03-J07 - full reading 
    ATCCTCTCCG TCCTCTGTTC TTCTCATTGG CCGCCATGGT GAAGTACTCT 
    CAAGAGCCCG ATAATATCAC CAAATCTTGC AAGGCGAGAG GAGCCGATCT 
    CAGGGTCCAC TTCAAGAACA CTAGAGAAAC AGCGCACGCC ATAAGGAAGC 
    TACCATTGAA CAAGGCCAAA AGGTACTTGG AAGATGTCAT AGCTCACAAG 
    CAAGCTATCC CCTTCACCCG TTTCTGTCGT GGTGTTGGTC GTACCGCTCA 
    GGCAAAGAAC AGGCATTCGA ACGGACAAGG TCGCTGGCCT GCTAAATCTG 
    CTCAATTCGT TCTTGATCTT CTCAAGAATG CTGAGAGCAA TGCTGAGGTC 
    AAAGGTTTGG ATGTCGATGC CCTTTTCATT TCTCACATCC AAGTGAACCA 
    AGCAGCAAAA CAGAGGAGAA GGACATATCG TGCTCATGGA AGAATCAATC 
    CTTACATGTC AAACCCATGC CACATTGAGT TGATTTTGTC AGAGAAAGAA 
    GAGCCTGTGA AGAAAGAGCC GGAGACACAG TTGGCAGCAA AGTCAAAGAA 
    AGGAGCCTCA TCTTAAGCTA TAACATAGAC AGTCTATTTG TGCTCACTTG 
    TGTTACCCTT AATACTTTTT GTTAGCTTCT CTCTATAAGA CCAATACTCA 
    ATTTTTAAGT ATGATGATTA TCGGTTTTTG GATTGCTGAA AGAATCTCTC 
    TTTATCCTTG GTATTGATAG ATGAATAACT CATAGTAAAA TCTTGAAATA 
    TGTTTTAGAG ATGGATC

    Gene models with high sequence identity

    1. AT1G27400.1 [+] show detail - Ribosomal protein L22p/L17e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L22/L17 1.4e-56
    Gene3D Ribosomal protein L22/L17 5.8e-57
    HMMTigr Ribosomal protein L22/L17, eukaryotic/archaeal 1.4e-84
    PatternScan Ribosomal protein L22/L17, conserved site 0
    HMMPfam Ribosomal protein L22/L17 4.1e-34
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER SLC34A 4.7e-05
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATE 4.7e-05
    HMMPanther Ribosomal protein L22/L17, eukaryotic/archaeal 1.8e-114

    See the detailed result >

    AT1G27400.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L22p/L17e family protein
    Computational Description
    Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G67430.1); Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 321; Bacteria - 492; Metazoa - 519; Fungi - 182; Plants - 156; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR