F05918

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05918

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05918

Determination of introduced cDNA(s)

  • RAFL06-77-K06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-77-K06 - Resource: pda03683

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-77-K06 - full reading 
    AAAAACATAT ATACATCGAA AACAACTAAG TATAAACAAT AGTCATGGCT 
    AAGTCTGCTA CCATCGTTAC TCTTTTCTTC GCTGCTCTTG TTTTCTTTGC 
    TGCTCTTGAA GCACCGATGG TGGTGGAAGC ACAGAAGTTG TGCGAGAGGC 
    CAAGTGGGAC ATGGTCCGGA GTTTGCGGAA ACAGTAACGC GTGCAAGAAT 
    CAGTGCATTA ACCTTGAGAA AGCACGACAT GGATCTTGCA ACTATGTCTT 
    CCCAGCTCAC AAATGTATCT GCTACTTCCC ATGTTAATCT ACCAAGAGCT 
    CTTAATGCTT AATTATAAAG TGTGTATTTC TATTAAATAA GTATGTGTCA 
    CTCTATGAGA GGTCTTATGA CATGTACCAG ATATGTTATG TTGCTTTGTT 
    TTAATAAGAT AAACTTTTAC GTACC

    Gene models with high sequence identity

    1. AT1G75830.1 [+] show detail - low-molecular-weight cysteine-rich 67
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Gamma thionin 0
    superfamily Scorpion toxin-like 5.8e-15
    Gene3D no description 7.3e-18
    HMMPfam Gamma thionin 1.9e-14
    HMMSmart Knottin 1.2e-11

    See the detailed result >

    AT1G75830.1

    Model type
    Protein coding
    Short Description
    low-molecular-weight cysteine-rich 67
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
    Computational Description
    low-molecular-weight cysteine-rich 67 (LCR67); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 172 Blast hits to 172 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR