F06002

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06002

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
  • increased thickness (PATO:0000591)
    (Silique::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06002

Determination of introduced cDNA(s)

  • RAFL03-05-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-05-L05 - Resource: pda00205

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-05-L05 - full reading 
    CCCTCCAAAT ATATTTTCTC CACACTATCT TTGTCGTCTT CTTCCCCAAA 
    TGTTCTTCAT CGCTCACCAC ATAAACCCTA GCGATCGATT TCTCCAGAAA 
    TCAACCAACA ATCGTTCATG GCGTCTTCTT CCACCTTTCT GGAATTAACT 
    CCATTTCAAT GGAATCAACC TCTCCCATAC ACACAACGAC CCCATCATCG 
    TACTGTTCTT CTCTACTCCA AACCTCAAAG GAGATCAAAT TCGATTCGTC 
    TCCAAATCTC CGTCAAATAC AAGCAATCAA CATCTTCTTC AGATCCAGAT 
    TTGAGATCCA ATTTCAATCC ATTTGAACAA ATCGCGATTC AGGTCAAAAA 
    AGCGTTAGAT TCGTTGAAGA AACCTGCTAT AGCTGCGGTT TTACTTGGTT 
    TGCTTTTGTT CTATGATCCT AATTCGGCTT TAGCTGCGTC TGGTGGTAGA 
    ATTGGTGGTA ATTCCTTCTC GTCGAGGTCT CGGAGCTCTT CTTCTTCTTC 
    TTCGCAATCG TATTCTGTGC CGAGAACATC GAATCCGAGC TTTTCGTACT 
    CTGCTAGGAC CGCTCCGTAC TATGGACCGT CACCTTTCGG TGGGGGTTTT 
    GTGGGCCCGG CGGTTGGTTT TGGGTTTGGT GGTTTTTCGA GCTTCTCCTT 
    GATTTTGGTT GGTTTCGCTG CGTTTGTTTT GGTCTCTGGA TTCCTCTCAG 
    ATCGGTCACA GGATGATAGC ATTTTAATAG ATACTCAGAA AACTAGCGTC 
    ATTAAGCTAC AGGTGGGGTT GCTTGGTTTG GGGAGGACAC TACAACAAGA 
    TTTTAATCGT CTTGCTGAAA GTTCGGATAC ATCCACACCG GAGGGTCTGA 
    GCTATGTTTT AACCGAGGCA ACATTAGCTT TGCTGAGACA CCCTGATTAC 
    TGCATCTCTT GTTATTCATC AGTGGATGTG AAGCCGAGTA TAGAAAAGGG 
    AGAGAAGCGA TTTAATCAAC TCTCCATTGA AGAACGAGGA AAATTTGATG 
    AGGAGACACT TGTTAACGTG AATAGCATAA AGAGACAAAG CTCGAAGATT 
    CGGAAAGCTA GCGGTTTCAG CAATGAATAT ATTGTGGTAA CCATCTTGAT 
    GGCTGCAGAG GGTATACATA AACTGCCACC AATAAACGGA ACTACAGATC 
    TGAAGGAAGC CTTACTGAAA CTCGGGTCAA TACCAAGAAA CAAAATAATG 
    GCAGTAGAAG TACTATGGAC ACCGCAGAAC GAAGCCGACG CATTGTCAGA 
    AAGGGAACTA CTTGAAGATT ACCCACTTTT GAGGCCTTTG TAAATCATTG 
    TGATAATACC AAATAGAACC AATCTCTTGT TAGACGGTAC AGTTTCTTAC 
    TCTGTAAAGT GTAAAACACA CCATAACTTT GTTTTTATAC CACAAACCTC 
    TATGACCGGT TACCTAAACC GGAAATGAAG GCAATTAAGA ATCAAATTTG 
    ATACC

    Gene models with high sequence identity

    1. AT1G54520.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPIR Protein of unknown function DUF1517 2.4e-204
    HMMPfam DUF1517 1.1e-101

    See the detailed result >

    AT1G54520.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR