F06038

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) present in greater numbers in organism (PATO:0000470) (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06038

Determination of introduced cDNA(s)

RAFL05-02-N24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-N24 - Resource: pda00690

full reading [+] show sequence

TATCACAAGT CTGTTCCAAG TCTTATCCTT TCATCATCAT CATCACTTAC 
CTTCTTCACA GAGAGAGAGC TTCATCATCA TATGTAATGT GAGATGTCTC 
TTGAACAATG CAACAAGAAG CTCTCTCTTT CCTCTCGTCC TCTCTCCCTT 
CCCTTCACCA CAATTTTCCC TCTCTTTCTC GCCTCCGCTT CAACAATTTT 
CCCGCACTTT CCTTCAAACC AAACACTTCA TCATCATCTT CATCATTCTT 
CAAATCCCCA GATATACCCT CTCTCTCCTC CACCACAACA ACAACAACAA 
CCACCGAAAC CCTAGAATCC TCAATCCACG AGAAACTCAT TTACCTCGAT 
TCACTCGGAA TCGATTTCCT AACCCTAATC AACCGTCATC CACCTCTCCT 
CTCCACCGCT CTCTCCGCCG TTGAATCAGT CGTCGATTAC ATGACCACTC 
CACCAATAAA CTTCACTTTA CAAGACTTTC GCCGCCTCGT CTCAATGTGT 
CCAGAGCTTC TCACTTCACC TTTAACCTCA CACACAATCC CAGTCATCAC 
TTTCCTCCTC CGTGAAGTCG GCGTTGACTC TATCTTTGAC CTCCGTCAAG 
CTTTACGACG TCGTCCTCGT CTTCTCGCTT GTAGCGTCGA TCACCAGCTT 
AGACCAACGC TTTACTTTCT CCAGAGAATC GGAATCTTAG ATCCGCATAA 
ACATACGTAT CTTCTCTCTT GTAGCGTTGA CAATAAACTC GTACCACGGA 
TTGATTACTT CGAGAAGTTA GGATTCTCGC GGCGGAGCGC CACCGCGATG 
TTTAAGAGAT TCCCGCAGCT GTTTAATTAC AGTATTGCTG AGAATTATGA 
GCCGAAGTTG AAGTATTTGA TGGTGGAGAT GGGGAGAGAT GTTAGAGAGG 
TTCTTGAGTT TCCTCAGTAT TTCTCGTTTA GTTTGGAGAA TCGGATTAAA 
CCGAGACATG AAGCTTGTGC TGCGAAAGGT GTGAGGTTTC CATTGCCGGT 
GATGTTGAAG ACTAATGAAG CTGGTTTTAG AGATACATTG GAGGTATGTT 
GTGATTCTTC TCCGCCATTG AAGACCTCTC GCCTTGTTAC TGTACAAAAA 
GATTCTTGAT TTATAGAGTT TTGTGTGCTA GGAGAACATG GAAGCAAGTA 
CATTTTTGTA ATGAATGATG ATGAAGAACT CAATGAATGA AGAAACCAGC 
CTCTGCCTAC ATTTTGAGAC ACACACAGGG ATGGTGAGTT AAATCTTGAT 
AAGAGAAAGA ATGTTCATTT ACAATTCACG ATTCCGATGT ATTTCGGTCT 
AGTTATTGTT AGTGAACGAG AAATCAAGTG TATGTAAGTC CAGAAACCGT 
GTAGAGTTGC GATTTGCAGA GAATTGTGAT TCTACAATTG GAGCC

Gene models with high sequence identity

AT2G36000.1 [+] show detail - Mitochondrial transcription termination factor family protein
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Mitochodrial transcription termination factor-related	0.047
HMMSmart	Mitochodrial transcription termination factor-related	0.00069
HMMSmart	Mitochodrial transcription termination factor-related	0.63
HMMSmart	Mitochodrial transcription termination factor-related	6e-06
HMMSmart	Mitochodrial transcription termination factor-related	0.0062
HMMPfam	Mitochodrial transcription termination factor-related	6.4e-39

See the detailed result >

AT2G36000.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 810 Blast hits to 602 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 725; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link: InterPro Scan - TAIR