F06045

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06045

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06045

Determination of introduced cDNA(s)

  • RAFL04-17-H07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-H07 - Resource: pda02348

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-H07 - full reading
    AAGTGCCGGC GAACCCTAAG ACTTTTGATA CCTCTTCTCT TCTCTCTCTT 
    CGAAGATGTC TCTCTCTTCC CTCACTCTCG ACTCCAATCC AAGATTCGCT
    GTTGGTGGAC CTTATCACCG CCGTTATCCT CCTCTTCACC ACCCTCGAAG
    CTTCGTCTCT TGCTCTGCTA AACGTCCAGC TGTCTCCGCT TCACTGAGCG
    TCGCCGCTGA TTCAGCCGCC ACTGAGTCTC TTGGACGGAT TGGATCACTG
    AGTCAAGTAT CTGGTGTACT CGGTTGCCAA TGGGGAGATG AAGGTAAAGG
    CAAACTCGTT GACATCTTAG CCCAACACTT TGACATCGTT GCTCGTTGTC
    AGGGTGGAGC TAATGCTGGA CACACTATAT ACAATTCAGA GGGAAAGAAA
    TTTGCACTTC ACCTTGTGCC TTCAGGTATC CTGAATGAGG ATACTACTTG
    TGTCATTGGA AACGGAGTTG TGGTGCATTT GCCAGGTCTC TTCAAAGAGA
    TTGATGGTTT GGAGTCCAAT GGTGTCTCCT GTAAAGGAAG GATTTTGGTC
    TCTGATCGCG CTCACTTGTT ATTCGATTTC CATCAAGAGG TTGATGGGCT
    CAGGGAATCT GAGCTTGCCA AGTCGTTCAT TGGCACCACC AAGAGGGGAA
    TTGGTCCTGC CTACTCTAGT AAAGTGATAA GGAATGGTAT TAGAGTAGGT
    GATCTCAGGC ACATGGATAC TTTACCTCAA AAGCTTGACC TTTTACTATC
    AGATGCAGCG GCAAGGTTTC AAGGGTTCAA GTATACTCCT GAAATGCTTC
    GGGAAGAAGT TGAAGCATAC AAGAGATACG CTGACAGATT GGAGCCCTAC
    ATTACTGACA CTGTCCATTT CATCAATGAC TCGATTTCGC AGAAGAAAAA
    GGTTTTGGTC GAAGGTGGTC AAGCTACAAT GTTGGACATT GACTTTGGGA
    CTTATCCTTT TGTTACTTCC TCCAGCCCCT CAGCCGGTGG GATCTGCACA
    GGTCTTGGTA TTGCACCAAG TGTTGTTGGT GATCTAATTG GAGTGGTAAA
    AGCATACACT ACAAGAGTTG GTTCAGGTCC ATTCCCGACA GAAAATTTGG
    GCACAGGTGG TGACCTTCTT AGGTTAGCTG GACAGGAGTT TGGCACTACA
    ACTGGTCGTC CTCGTCGGTG TGGCTGGCTT GACATTGTTG CCCTGAAATT
    TTCTTGCCAA ATCAATGGAT TTGCATCACT TAATCTCACT AAGCTTGATG
    TACTTTCGGA TCTGAACGAA ATCCAGCTGG GTGTGGCTTA CAAGAGGAGT
    GACGGCACCC CTGTTAAATC ATTCCCTGGT GATCTTCGTC TTCTCGAAGA
    ACTGCATGTG GAGTATGAAG TCTTACCTGG GTGGAAGTCT GACATATCCT
    CGGTCAGAAA CTACTCTGAT CTTCCAAAGG CTGCTCAGCA ATATGTTGAG
    AGGATTGAAG AACTCGTGGG TGTGCCCATT CATTACATTG GTATTGGGCC
    CGGTCGTGAT GCCCTTATAT ATAAATGATT TTTAGTGTTA GGCTTTTTTG
    GTTCCTCCAC AAACTCAAAA ATTGATCAAG TGTCAAGTTA CTGAGAATTA
    TTACTCTCTT TGGAATGACT AGTGTATCTG TTGCATTGTT TCTAATATTG
    GAATGAAGAG GAATTCTGTG CTTAAGCAGT GAGGTTGCTA TATTCATAAT
    GTTTAAGCTT TCGTGTT

    Gene models with high sequence identity

    1. AT3G57610.1 [+] show detail - adenylosuccinate synthase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 6e-169
    HMMTigr Adenylosuccinate synthetase 4.2e-155
    HMMSmart Adenylosuccinate synthetase 7.2e-245
    HMMPanther Adenylosuccinate synthetase 1.1e-238
    HAMAP Adenylosuccinate synthetase 31.735
    PatternScan Adenylosuccinate synthase, active site 0
    PatternScan Adenylosuccinate synthase, active site 0
    HMMPfam Adenylosuccinate synthetase 4.1e-162
    Gene3D no description 7.2e-58
    Gene3D no description 2.7e-59

    See the detailed result >

    AT3G57610.1

    Model type
    Protein coding
    Short Description
    adenylosuccinate synthase
    Curator Summary
    encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)
    Computational Description
    adenylosuccinate synthase (ADSS); FUNCTIONS IN: adenylosuccinate synthase activity; INVOLVED IN: response to cadmium ion, purine ribonucleotide biosynthetic process, AMP biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adenylosuccinate synthase, active site (InterPro:IPR018220), Adenylosuccinate synthetase (InterPro:IPR001114); Has 10496 Blast hits to 10490 proteins in 2781 species: Archae - 222; Bacteria - 5613; Metazoa - 213; Fungi - 143; Plants - 71; Viruses - 18; Other Eukaryotes - 4216 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR