F06119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06119

Determination of introduced cDNA(s)

  • RAFL05-14-B01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-B01 - Resource: pda02582

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-B01 - full reading 
    CACTCGAAAA CTCATCAAAT CAAAAATCAA ACACAGAGAA GAGAAAATGG 
    CCGCAGAAGG AGAAGTTATC GCTTGCCACA CCGTTGAAGA TTGGACCGAG 
    AAGCTCAAAG CCGCCAACGA ATCCAAGAAA CTGATTGTGA TAGACTTCAC 
    TGCAACATGG TGCCCACCTT GCCGTTTCAT TGCACCCGTC TTTGCTGACT 
    TAGCCAAGAA GCACCTCGAC GTAGTCTTCT TCAAGGTCGA TGTTGACGAA 
    TTGAACACTG TTGCTGAGGA GTTTAAAGTT CAGGCAATGC CAACGTTTAT 
    CTTCATGAAA GAAGGAGAGA TCAAGGAGAC TGTGGTTGGT GCTGCTAAAG 
    AAGAAATCAT TGCCAATCTC GAGAAGCACA AGACAGTTGT TGCTGCTGCT 
    TGATTTGCTT TTCTCTCTTA CCTATTTTGC TAAAATATGT TTGGTGTTTT 
    AATAAATCCT TTGTTCGCC

    Gene models with high sequence identity

    1. AT5G42980.1 [+] show detail - thioredoxin 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther THIOREDOXIN H-TYPE-RELATED 5.4e-49
    HMMPanther Thioredoxin, core 5.4e-49
    FPrintScan Thioredoxin-like subdomain 4.1e-06
    FPrintScan Thioredoxin-like subdomain 4.1e-06
    FPrintScan Thioredoxin-like subdomain 4.1e-06
    superfamily Thioredoxin-like fold 6.7e-34
    ProfileScan Thioredoxin-like 14.461
    PatternScan Thioredoxin, conserved site 0
    HMMPfam Thioredoxin domain 2.4e-29
    Gene3D Thioredoxin fold 3.8e-33

    See the detailed result >

    AT5G42980.1

    Model type
    Protein coding
    Short Description
    thioredoxin 3
    Curator Summary
    encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
    Computational Description
    thioredoxin 3 (TRX3); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: response to hydrogen peroxide, defense response to fungus, response to microbial phytotoxin; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR