F06124

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06124

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06124

Determination of introduced cDNA(s)

  • RAFL06-13-H11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-H11 - Resource: pda03155

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-13-H11 - full reading 
    AAGCAAAAGA AGAAGAAGAA GAAGTAATGG CTTCCTCTAT GCTCTCCTCT 
    GCCGCTGTGG TTACCTCCCC GGCTCAAGCC ACCATGGTCG CTCCATTCAC 
    TGGTTTGAAG TCATCCGCTT CTTTCCCGGT CACCCGCAAG GCCAACAACG 
    ACATTACTTC CATCACAAGC AATGGGGGAA GAGTTAGCTG CATGAAGGTG 
    TGGCCACCAA TCGGAAAGAA GAAGTTTGAG ACTCTATCTT ACCTCCCTGA 
    CCTTACTGAC GTCGAATTGG CTAAGGAAGT TGACTACCTT CTCCGCAACA 
    AATGGATTCC TTGTGTTGAA TTCGAGTTGG AGCACGGATT TGTGTACCGT 
    GAGCACGGAA ACACTCCCGG ATACTACGAT GGACGGTACT GGACAATGTG 
    GAAGCTTCCA TTGTTCGGAT GCACCGACTC CGCTCAAGTG TTGAAGGAAG 
    TTGAAGAATG CAAGAAGGAG TACCCGGGCG CCTTCATTAG GATCATCGGA 
    TTCGACAACA CCCGTCAAGT CCAATGCATC AGTTTCATTG CCTACAAGCC 
    CCCAAGCTTC ACTGATGCTT AAATCCTTTT CTGGAATATT CAATGTTGAC 
    TATCCGGAAC CCAATTTTGT ATGGTCAATG TAAATTTAAG TAATTATTTT 
    GC

    Gene models with high sequence identity

    1. AT5G38430.1 [+] show detail - Ribulose bisphosphate carboxylase (small chain) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    Gene3D Ribulose bisphosphate carboxylase, small chain 1e-54
    superfamily Ribulose bisphosphate carboxylase, small chain 3.2e-53
    HMMPfam Ribulose bisphosphate carboxylase, small chain 3.4e-41
    HMMPfam RbcS 5.9e-21

    See the detailed result >

    AT5G38430.1

    Model type
    Protein coding
    Short Description
    Ribulose bisphosphate carboxylase (small chain) family protein
    Computational Description
    Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR