F06138

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
  • increased thickness (PATO:0000591)
    (Silique::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06138

Determination of introduced cDNA(s)

  • RAFL09-82-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-82-J05 - Resource: pda17859

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-82-J05 - full reading 
    CGATCCTTCT ATGGTTGCTC AAATCCGACC AAGAACAACA CAAAAGGCGT 
    TCGTGGTGAC AAATCCGGAA CAAGACAGTA CTCTTGAAGT ACAAGAAACA 
    GAGACACTCA AAGAAGAGCA ATCAACAGAG AAGATGAAGA AGCAGCCAAC 
    ACCATTGAGA CCAGTGGAGA AACAGCTGAA CGTGAAGAGC AAGGGTATGG 
    GCGATTTTGG TGGTCAGTGG CTAAGCAGTG TCACACGTCA CGTTAGGATC 
    TACGCTGCTT ATATTGATCC AGAGACTTGT GAGTTTGACC AGTCACAAAT 
    GGATAAACTC ACTTTGATTC TTGATCCTAC TGAAGAATTT GTGTGGGATG 
    ATGAAAGCTG TAACAAGGTC TATTCTTATT TCCAAGAACT CGTCGATCAC 
    TACGAGGGAG CACCATTAAC GGAGTACACA TTGAGATTGA TAGGATCGGA 
    CGTAGAACAT TACATAAGGA AGATGTTGTT CGATGGAGAA ATACAATACA 
    ATATGGATGC AAGAGTTCTT AATTTCAGTA TGGGAAAGCC TCGTGTACAA 
    TTCAATACCA GTAACATTGA AGGTGGTGGA GATGGTCAGC CTCAAGAGGA 
    CGCTTAGTGA AACAAACTCT ATTTTATAAT CATGTAATGG GAATATAAAT 
    ATATTGTAGT ATGCTTTTTA ATTTTGTCTA TCACAAAGTA ACATATGTAT 
    ATATCATGAC ATATGCTATA ATTATTTTTG TAATAATCAA TCTTAAGTTT 
    CTTTGTCTTA AAAGAAAAA

    Gene models with high sequence identity

    1. AT4G37925.1 [+] show detail - subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G37925.1

    Model type
    Protein coding
    Short Description
    subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
    Curator Summary
    Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
    Computational Description
    subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (NDH-M); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase subunit M (InterPro:IPR018922); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR