F06140

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06140

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06140

Determination of introduced cDNA(s)

  • RAFL05-15-F12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-F12 - Resource: pda02640

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-F12 - full reading 
    ACTCGTACAA CAATGGCGTC GATGGCTGCA ACCACCAATT TCACCAAATC 
    TATGCTCTTT CCATTCTCTC ATGTTTCAGG AAATGCGAGC TTGAATTCGC 
    AGAGAAGAAC ATGGCCAAAG CAGTACAAGT CTAAAAATGG TTACAGGTCT 
    CTTCGAGTGA ATGGATTATT TGGAGGTGGA AACAAAGATA ATAACAGTGA 
    AGATGGACAA TCAAAGGCAG GAATATTTGG TAATATGCAG AATATGTATG 
    AGACTGTGAA GAAAGCTCAA ATGGTTGTTC AAGTGGAAGC TGTACGTGTT 
    CAAAAAGAGT TAGCTGCCGC AGAATTTGAT GGTTATTGTG CAGGCGAGCT 
    TGTCAAGGTT ACGTTATCAG GTAACCAGCA ACCAATCCGT ACTGATATTA 
    CCGAGGCAGC AATGGAACTA GGTTCCGAAA AACTATCACA ACTTGTCACA 
    GAAGCATACA AGGACGCACA CGCCAAGAGT GTGGTGGCTA TGAAAGAGAG 
    AATGAGTGAC CTTGCGCAGA GCTTAGGAAT GCCACCGGGT CTCAGCGAAG 
    GAATGAAGTA AGAAGCTGTT TTTGTTGTTT CATTTCAACT TTCAGGTATG 
    AGAGGTTCGG CTTTTTTTGT TTGTTTGTAT ATCAGTCAGG CAGAAGCAAA 
    GAGCTTTGTA CTCTACTCTT ATGGAATTAT ATATAAAAGA TTCG

    Gene models with high sequence identity

    1. AT2G24020.1 [+] show detail - Uncharacterised BCR, YbaB family COG0718
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Uncharacterised protein family UPF0133 4.3e-16
    Gene3D Uncharacterised protein family UPF0133 3.2e-21
    superfamily Uncharacterised protein family UPF0133 1e-20
    HMMPfam Uncharacterised protein family UPF0133 3.5e-19

    See the detailed result >

    AT2G24020.1

    Model type
    Protein coding
    Short Description
    Uncharacterised BCR, YbaB family COG0718
    Computational Description
    Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1); Has 2239 Blast hits to 2239 proteins in 898 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR