F06142

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06142

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06142

Determination of introduced cDNA(s)

  • RAFL05-08-P17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-P17 - Resource: pda01087

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-P17 - full reading 
    ATCACACAGC TCTTGAAAAC CATCTTAAAG CAACTCAAAG CTCAAATCGA 
    AATTTCTAGT TTCTCTTTAT CATTCACGCT AAGTGTTCAA TCGAATCAAG 
    ATTAAGTATG GCAGAAGAGT ACAAGAACAC CGTTCCAGAG CAGGAGACCC 
    CTAAGGTTGC AACAGAGGAA TCATCGGCGC CAGAGATTAA GGAGCGGGGA 
    ATGTTCGATT TCTTGAAGAA AAAGGAGGAA GTTAAACCTC AAGAAACGAC 
    GACTCTCGCG TCTGAGTTTG AGCACAAGAC TCAGATCTCT GAACCAGAGT 
    CGTTTGTGGC CAAGCACGAA GAAGAGGAAC ATAAGCCTAC TCTTCTCGAG 
    CAGCTTCACC AGAAGCACGA GGAGGAAGAA GAAAACAAGC CAAGTCTCCT 
    CGACAAACTC CACCGATCCA ACAGCTCTTC TTCCTCTTCG AGTGATGAAG 
    AAGGTGAAGA CGATGAGAAG AAGAAGAAGG AGAAAAAGAA GAAGATTGTT 
    GAAGGAGATC ATGTGAAAAC AGTGGAAGAA GAGAATCAAG GAGTAATGGA 
    CAGGATTAAG GAGAAGTTTC CACTCGGAGA GAAACCAGGG GGTGATGATG 
    TACCAGTCGT CACCACCATG CCAGCACCAC ATTCGGTAGA GGATCACAAA 
    CCAGAGGAAG AAGAGAAGAA AGGGTTTATG GATAAGATCA AGGAGAAGCT 
    TCCAGGCCAC AGCAAGAAAC CAGAGGATTC ACAAGTCGTC AACACCACAC 
    CGCTGGTTGA AACAGCAACA CCGATTGCTG ACATCCCGGA GGAGAAGAAG 
    GGATTTATGG ACAAGATCAA AGAGAAGCTT CCAGGTTATC ACGCCAAGAC 
    CACTGGAGAG GAAGAGAAGA AAGAAAAAGT GTCTGGTTAA GAGAAAAATA 
    TGATAAGAGT GAATAATAAT GATGTGGGAG TGGGACTTAT GTTGTTTTTT 
    GTTTTTTGTT GATCATTGTC TCTTTTATTT TGTCTTTCTA GCTGTTCTCC 
    AAGTTTGTGT TTAGAGTTAG ATCATTTGTG TCTAAAATCT ATAAAATTAT 
    TTTATCTATG GGGTAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G20450.1 [+] show detail - Dehydrin family protein
      E-value: 0; Score: 99.81

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Dehydrin 1.5e-13
    HMMPfam Dehydrin 3.6e-22
    Coil coiled-coil 0
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0

    See the detailed result >

    AT1G20450.1

    Model type
    Protein coding
    Short Description
    Dehydrin family protein
    Curator Summary
    Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16; Bacteria - 327; Metazoa - 2363; Fungi - 375; Plants - 2004; Viruses - 65; Other Eukaryotes - 2990 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR