F06146

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06146

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06146

Determination of introduced cDNA(s)

  • RAFL09-39-J18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-J18 - Resource: pda06217

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-39-J18 - full reading 
    AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA AGAAAGATCC AACTTCCACA 
    AAGAACCATG GAAGCTGAGA AAGAAACAGA ACAAGAAGGA AACTTGACAG 
    TAATGAAACT TCCGGTGTTA CCAACTAAAC CCAACACTCA CAGCCACTCT 
    ATGTCATCAC CAATTCACAG TTCCATATCA GCTTCAGTTC CCTTTAGCTG 
    GGAAGAAGAG CCTGGCAAGC CCAAGCAACA CTCTACTTCT TCTTCCTCCT 
    CTTCCTCTTC CTCACCATTA ACTTCTTATT CTTCATCTCC TTTTGAAACT 
    CACAAGTCCT TAGAGCTACC ACCAAGGCTT CACTTACTTG AAAAAGATGG 
    AGGATCAGTA ACCAAACTTC ACTCGCCTAT AACAGTCTTT GATGGACCTT 
    ATAGCATGAC GACATCAAAA AGGATGGATT CACCTTCCTT TAGGATGATG 
    GTGAAAGGTA GTGCTGATTG TTATGGGTCT TTCAGGAGTG ATATCGATGG 
    TGATTTAGAG GATTTGGAAG TGGGCTCTAA GCAGCAGGAG AACTTGAGTA 
    GTGGCTCTTT GGCTGTTGTG AAGAAGAGAG GGAGATTAGG GTTTTTTGGG 
    TTTAGGAGGA GGAGAGCATT GAAAGGGAAA ACAGAGTTTG GTAGAGGTAG 
    TTATGTGTTC CCATCTTCTG TAGACAGAGA GAGTGAATAC AGTAGAAAGG 
    AAGAGGAAGA AGAAAAAGAA GACAAAAGGT TTGGTTATGA TGATACTGAT 
    GGTATTAGTT GCAGCCAAAG CAGCAGGTTT TGTGATGTGA AGATCTCAAG 
    CATTAGTAGA ACAGGCAGCT TCTCTACTCT GCCTGCACCA CCTTCTTCTT 
    CTTCAAAGTC TCACTTTTGG ACGAATGTGT ATGCAGGACT AAAGCAAGTG 
    GTTCCATGGA AGAGCAAGAA GACTACAGTT TGAGATTCTG CCATATCAAA 
    GATTCGAAAG ATAAAACACC AAGTAACAAG AAAGCTTCTA TGGTTTCTAC 
    AAGTATTTTT AAGCTTTTGT TTATGATTTT TTTCAATATT TCCAAGAAAA 
    TGACACGACT AGTAAAACCA TTGTGAAACC CAGTTTTTTT TCACGCTTGT 
    TGTTGTGTTT GAATGTTTTT GAGACTTTTG TAAAGAGAAA CAGAGAATCT 
    TACGATGAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT4G00950.1 [+] show detail - Protein of unknown function (DUF688)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G00950.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF688)
    Computational Description
    maternal effect embryo arrest 47 (MEE47); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR