F06148

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06148

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06148

Determination of introduced cDNA(s)

  • RAFL14-37-G21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-37-G21 - Resource: pda18516

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-37-G21 - full reading 
    CTCTCTGAAA TTTCCTTTTT CCTTTTTTGT CTTTTTTTTT TTTAATTAAT 
    TACTTTTCTC TGAGACACAG CAATGGCGTC GACGAAGCCC GATTCCGCAA 
    TCAACCTTGA AGAAGAGGCT GAAGGCGACG GTGTAGCCGT AGACGATCCG 
    ATTTTCATAC CGGAGACCAC GAACTTACTC GTCCGTTACT CGCCATTCGA 
    CGACAGGGAC ATCGATTGCA ATCCTTATTT CCCTTTCACA GGCCCGATTT 
    CAGATTCTGG ATCAGGTTCT TACTCGGATT CTGAGCCCGA TCCCAACAGC 
    TGTCCCATCG ATTTCTTCGA TCGAGATTCT TCCGATGTTG ACGTGGCTGA 
    GTACTTGGAA TCAGGAGGGC TGACCGCCGG TGATTATAAT ATTTGGGGCT 
    TTTATGACCC CAAGGAAGAC GAGGAAGAGG AGGAGATAGT TTTGGGGACT 
    TCCGGGTCGG ATCTGCAACC GGGTGATTCA GGGGAGCAAG GGCTTCGAGT 
    GACCGGTATC GATTCAGATT CCGATTGTGA AGATGGCGTG TTTGATTTTA 
    TCTCTGAGGA TAGTAGCGGG AATAGGGGAA ATGATTCGGG TCGGGTCGAG 
    GTTGGTACGG GTCTTCCTCC TGTGTGGGAT CATCTCTTCG GAGAGGGAAC 
    CGTGTTGGCT GATGAAGAAT GGGAGGAGGT GCAGAACGCG ATTAACTGGA 
    CAGCTTTTAG TGGACCCGAA GATGAGGACG AAGAAGATGA ATTGTCTTCA 
    CTATCAAGGG ATGATGAAGA AGAAGATCAT GAACTGGACT GGCAGGTTTT 
    GTTAACTGTT AACAATGTTG TTAATTATAT CGAACAAGCT GAAGGAATCA 
    TGCTAAACCC TGATGATATC GATCCGGATT ATTACCTGTA TCTATCTGGT 
    TTGGATGAAT TTGATGAAAA TCATAGTGGA CATTATGATG CTGATGCTAT 
    TCTTGGGCAA ATGTTTGATG ACGAGACTGG AATCAGGGGA AATCCTCCAG 
    CAGCCAAAAG TGTAATTCAG GATCTTCCGG TTGTGGAGCT TGCTGTGGAA 
    GAGTTAGACA AAGGGAACAA TGTTTGTGCG GTATGCAAAG ATGAAATGTT 
    AGTGGAGGAG AAAGTAAGGA GGCTTCCTTG TAGTCATTTC TATCATGGAG 
    AGTGTATCAT ACCTTGGTTG GGGATAAGGA ATACTTGCCC GGTTTGTCGG 
    TATGAGCTGC CTACTGATGA TCTTGAGTAT GAAAGACATA AGAGCTCAGA 
    AAGGGGCGAT ACTGGTTTGG CAAGGAACGT GTTGCCGGGT AGATATAGTT 
    AATTGAATAT TTGAAGTGAT CTATTCTTCA AGTTAATAGA CATGGTTTCA 
    GAGGCAAGAT CCTTGAACCA CTTTGTTTAT GGTAAGCACT TATCGTGAAT 
    GTGATAATGT TTAAGTTGCA AAAAAAAAA

    Gene models with high sequence identity

    1. AT3G02340.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 4.9e-16
    ProfileScan Zinc finger, RING-type 11.988
    Gene3D no description 9.3e-14
    HMMSmart Zinc finger, RING-type 7.1e-07
    HMMPanther RING ZINC FINGER PROTEIN 3.9e-32

    See the detailed result >

    AT3G02340.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1); Has 9104 Blast hits to 9081 proteins in 277 species: Archae - 2; Bacteria - 2; Metazoa - 2595; Fungi - 690; Plants - 4590; Viruses - 42; Other Eukaryotes - 1183 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR