F06214

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06214

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06214

Determination of introduced cDNA(s)

  • RAFL04-13-H08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-H08 - Resource: pda00407

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-H08 - full reading 
    AAAAACACTT AACCAAGCAA ACAACAAATG GCTCTTTCAA TCGTTCTTCT 
    TCCCTTCATT CTCATTCTCA TACCGACTTT TCTCAGTTCG GTTTTCGCCG 
    TTTCACCACT CAAAACTGAT ACGTTAAAAC CGGGGCAGCA GCTCAGAGAC 
    TGGGAGCAGT TGATCTCTGC GGATGGTATC TTCACTCTCG GATTCTTTAC 
    ACCTAAAGAC TCATCTACTT CCGAACTCGG GTCAGCTGGT CTTAGATATC 
    TTGGTATTTG GCCTCAAAGT ATTCCAATAA ATCTAGTTTG GGTGGGTAAC 
    CCAACCGAAT CAGTTTCTGA TTCATCTGGT TCTCTATCCA TTGACACCAA 
    TGGGGTTCTA AAGATAACAC AGGCAAACGC TATTCCAATC TTGGTGAACC 
    AAAGACCAGC CGCGCAGCTT TCATTGGTCG GGAATGTGTC TGCCATTTTA 
    CTCGATACCG GGAACTTTGT GGTCCGAGAG ATCAGGCCAG GAGGAGTTCC 
    GGGTCGTGTT CTATGGCAAA GCTTTGACCA TCCCACAAAC ACATTACTTC 
    CCGGGATGAA GATTGGGTTT AACCTAAGAA CCAAGAAAGA AGTATCAGTT 
    ACGTCTTGGA TAACTGACCA AGTCCCAGTC CCAGGAGCAT TCAGACTAGG 
    ACTAGACCCA TCAGGAGCTA ACCAGTTACT CGTCTGGCGC CGCGGGGAAA 
    TCTACTGGTC CAGTGGAATC TTGACGAACA ATGGAAGCTC TCATTTGAAC 
    TTAGAAGTAT CCAGACACTA CATTGATTAT GAATTCAAGT TCGATTCAAA 
    TAAGTACATG AAGTACTTCA GCTACTCAAT CAAGAAAGCT AATAGTTCGG 
    TCTTTTCCAG CTGGTTCTTG GATACTCTAG GCCAAATCAC TGTAACCTTT 
    TCTCTCAGCA GTAACAATAG CAGCACCTGG ATTTCCGAAA GCAGTGAACC 
    CTGCAAGACG GATTTAAAGA ACAGTTCAGC AATCTGCATC ACGGAGAAGC 
    CAACGGCTTG TAGGAAAGGG TCAGAGTATT TCGAACCCAG AAGAGGATAC 
    ATGATGGAAA ATAATACCGG TTATTATCCA TTTTACTATG ACGATAGTTT 
    GAGCGCTGGT CTTAGCGACT GTCATGGAAC CTGCTGGAGA AACTGTTCTT 
    GCATAGCTTT CCAAGCCTTT CCTGATGGAT GCCAATATTG GGAAAAAGGA 
    TCAAAGTTTG TTCCTTATGA TAGCTTCAAC TCCAATTTAG TAACTTATGT 
    TCTTGATTCT GTAAAGTGAT GTGTGGTTGT AACTTGAACG AGCAATTATG 
    TAACCAGACT AGTATCAGTA AAGGGGTTTA TTAAGAAAAA AAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT5G18470.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Curculin-like (mannose-binding) lectin 4.3e-20
    superfamily Curculin-like (mannose-binding) lectin 4.7e-16
    HMMPfam Curculin-like (mannose-binding) lectin 1.4e-25
    ProfileScan Curculin-like (mannose-binding) lectin 10.945

    See the detailed result >

    AT5G18470.1

    Model type
    Protein coding
    Short Description
    Curculin-like (mannose-binding) lectin family protein
    Computational Description
    Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G67520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR