F06236

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06236

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06236

Determination of introduced cDNA(s)

  • RAFL09-69-F08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-F08 - Resource: pda06645

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-F08 - full reading 
    GCGAAATCTC CACCAGAGTT ATGGGAATCA CCGGAAGTCT AACGCCAGAT 
    CAGCTCGATT TTTTCCACTC TCAAGGGTAT TTGGTAATCG AATCGTTCGC 
    GAGTGAGGAT GAGATAAGAG GCTTAAGGAA GAGGATGGAT GAGTTGCTTA 
    ATCAGTTTGA TTGTTCCGTC TCCTCTATCT TCTCCACCAA AAATCAGAAG 
    CACACCACAG ATAATTACTT CTTTGAGAGC GCTGAGAAAA TCTCCTTCTT 
    CTTTGAAGAA AAAGCTTTTG GTGATGATGG GAAATTGAAG CAACCCAAAC 
    AACTCTCTAT AAACAAAGTT GGGCATGCAC TGCATGAGCT TGACCCATTG 
    TATAAGGATT TCACATATTC GTCAAAGTTT TCAAGTTTGG CATCATCCTT 
    AGGTTACAGG AGACCAGTTG TCATGCAGTC TATGTATATT TTCAAGCAAC 
    CTGGAATTGG AGGCGAAGTT GTGCCGCACC AAGATAATTC TTTTGTGTAC 
    ACGGATCCAC AGAGTTGTAC TGGTCTCTGG ATTGCTCTTG AAGATTCTAC 
    ATTAGTTAAT GGTTGTCTTT GGGCAATTCC TGGATCTCAT AAGAATGGTT 
    TAGTTAGAAG GTTTATCCGT GGTGACAACG GTATAACCTT TGATCAGCCA 
    TCCCCATCTT ACGAGCAGAA AGATTTTGTG TCTATTGAAA TGAAAGCAGG 
    CTCATTGATT GCCATTCATG GTGATCTAAT CCATCAAAGT TTCGAGAATC 
    TATCCTCGAA GTCAAGACAT GCCTATAGCT TACATGTAGT AGAATCTGAT 
    GGATGTAAAT GGGCAAAAGA CAACTGGATA CAAAGAGCAA AAATGCCGGA 
    GCCTCTCTAT GTTCTTCCTT GATTCAAGCC AGTCGTGGAA AAACACTGTG 
    AGTTACTGTT TATCAAATTT CTTTTAAGAT CACTATCTTT GTGAGAACTA 
    TGAACAGTAA TAAGAACATG GCTAAAAGGG CCTTCTTGTG TCGTTTACTT 
    GTTGAAATAC AATTTGTTTC TTCTTGGCC

    Gene models with high sequence identity

    1. AT2G01490.1 [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 8.8e-133
    HMMPfam Phytanoyl-CoA dioxygenase 9.2e-65

    See the detailed result >

    AT2G01490.1

    Model type
    Protein coding
    Short Description
    phytanoyl-CoA dioxygenase (PhyH) family protein
    Computational Description
    phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR