F06239

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06239

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06239

Determination of introduced cDNA(s)

  • RAFL09-50-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-D16 - Resource: pda06444

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-D16 - full reading 
    ATAAAAAGCC TAACGAAGAA GACGAAGAAG AAGAGGAACA AACAACCATG 
    GGTGAAGTGG TTAAGGATGG AAGAGAAGAA GTGATCCAGG CATGGTATAT 
    GGATGATAGC GAAGAGGATC AGAGACTTCC TCACCACAAG GATCCTAAGG 
    AGTTTCTATC TTTGGACAAA CTTGCAGAGC TGGGAGTACT TAGCTGGAGA 
    CTTGATGCTG ATAACTATGA AACCGATGAG GATTTGAAAA AGATCCGCGA 
    ATCTCGTGGT TACTCTTACA TGGACTTTTG TGAGGTATGC CCGGAAAAGC 
    TTCCAAACTA TGAAGTGAAA GTGAAGAGCT TTTTCGAAGA ACATTTGCAC 
    ACTGATGAAG AGATCCGTTA CTGCGTTGCA GGAAGCGGTT ACTTTGATGT 
    GAGGGATCGC AATGAAGCTT GGATTAGAGT ATGGGTAAAG AAGGGAGGTA 
    TGATAGTCTT ACCTGCTGGA ATATATCATC GCTTCACCGT AGACTCAGAC 
    AACTATATCA AGGCAATGCG GCTTTTCGTG GGTGAACCGG TCTGGACACC 
    ATACAATCGC CCACACGACC ACCTCCCTGC AAGGAAAGAG TACATCGATA 
    ATTTCGTGAA GGTGAATGAA GGTGGTGTCA TAGACGCGTC AGCCTAGAGG 
    ATTCTCAGTC TTATGCATCA GATTTCTATA AACTAAGCAT ACAATAAAGA 
    GAGCTTTCTG TCTCATGTTG GATATTATGT CATCTACAGA TCCACTTGTG 
    AAGAAACTTT GATTCGTGTG GCTTTGGCAT TATGGTTGTG TTGTAACTGT 
    ATTTATAGTT TATACTCCAG AAATCAAACT GTGTTACATT

    Gene models with high sequence identity

    1. AT4G14710.2 [+] show detail - RmlC-like cupins superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Acireductone dioxygenase, ARD 5e-69
    HMMPanther Acireductone dioxygenase, ARD 1.8e-96
    Gene3D RmlC-like jelly roll fold 3.8e-75
    superfamily Cupin, RmlC-type 2e-45

    See the detailed result >

    AT4G14710.2

    Model type
    Protein coding
    Short Description
    RmlC-like cupins superfamily protein
    Computational Description
    ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: oxidation reduction, L-methionine salvage from methylthioadenosine; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase 1 (TAIR:AT4G14716.1); Has 1544 Blast hits to 1537 proteins in 521 species: Archae - 0; Bacteria - 702; Metazoa - 158; Fungi - 135; Plants - 464; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR