F06315

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06315

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06315

Determination of introduced cDNA(s)

  • RAFL06-12-M16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-M16 - Resource: pda03119

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-M16 - full reading 
    TGCTTCTCCA TCGCCGTCTA AAAACCCTAA TCTCACTCCG CCTCCTGCGA 
    GATCCATCAA CACTTCCGCA AAAATGAAGG TTGTTGCTGC GTTTTTGCTT 
    GCCGTCTTGA GCGGGAAAGC TTCCCCAACC ACTGGCGATA TCAAGGATAT 
    TCTTGGATCA GTTGGTGCTG AGACAGAGGA TTCTCAGATT GAGCTTTTGT 
    TGAAGGAAGT GAAAGGGAAA GACTTGGCTG AGCTAATTGC TGCTGGAAGG 
    GAGAAGTTAG CTTCAGTACC ATCAGGAGGT GGTGGTGGTG TTGCGGTTGC 
    TTCTGCTACA TCTGGAGGTG GAGGAGGTGG TGGTGCTCCT GCTGCTGAGT 
    CCAAGAAAGA AGAGAAGAAA GAAGAGAAAG AAGAATCCGA TGATGACATG 
    GGTTTCAGTT TGTTCGAGTA ATGCGGTATA CTTGGCATTT GGTTTTGCTG 
    TACCCTTTCG AAATCTTTAT GTCGTTGTTT AGTTTGTTGT ATTCGACTAT 
    CTTCTTAGAC TTTGCTGAAA TTCTCAAGAG ATTTTTTTAC TC

    Gene models with high sequence identity

    1. AT2G27720.1 [+] show detail - 60S acidic ribosomal protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P2 5.7e-63
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 5.7e-63
    Coil coiled-coil 0
    HMMPfam Ribosomal protein 60S 2.5e-25

    See the detailed result >

    AT2G27720.1

    Model type
    Protein coding
    Short Description
    60S acidic ribosomal protein family
    Computational Description
    60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1976 Blast hits to 1975 proteins in 364 species: Archae - 32; Bacteria - 0; Metazoa - 785; Fungi - 446; Plants - 440; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR