F06335

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06335

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06335

Determination of introduced cDNA(s)

  • RAFL09-21-H07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-H07 - Resource: pda05608

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-21-H07 - full reading 
    GAACTCTCTC GTTCCGTCTT CTCCGATTCG CTTTACACTA CTTCTTCCCT 
    CGTCTCTCTC TCTCGCGCTT CACTGTGAAT TAATCGAGAG ATCTAAATAT 
    CCGCCATGGA CAGAGCACAA TTGATCTTGT TAGGTCTACC TATATTCTTG 
    TTTTGTTCGG ATCTCTTCAA CCTCTTCACT CCTCCGCCTC CTAAACCTCA 
    GCCTCACCGT CCTCATCAGC CACCGCATAT TCCTCACCAG CATCGTCCTA 
    ATGCGATCAT CCCCGAAACC CTAGACTTTC CTTCACAGAA GACAAGTGGC 
    TTAGGAGGAG CAATTGGATA TGGAAATACA GTAGAGATCA ACTTCTGCGT 
    CTCCTGTTCT TACAAGGGAA CTGCAGTCAC CATGAAGAAG ATGTTAGAGA 
    CGGCTTTTCC CGGTTTAGAT GTGATTCTCG CAAATTACCC ACCACCAGCA 
    CCAAAACGCC TTCTAGCTAA GGTTGTGCCG GTTGTTCAGA TGGGAGTTAT 
    TGGTATGATA GTTGCAGGTG ATCGTATCCT TCCCATGATT GGAATTACGA 
    ACCCACCTGC TTGGTTCCAC TCCTTGAGGG CCAACAGATT TGGATCCATG 
    GCTTCCACTT GGCTTATCGG AAACTTTCTG CAGTCTTACC TTCAAAGCTC 
    AGGCGCCTTT GAAGTTCACT GCAACGGCGA ACCGGTGTTC TCTAAATTGA 
    AAGAAGGTAG ATTCCCAGGA GAGATCGAGC TGAGAGATCT CATCAGTAAA 
    ACTCTAACAC GACCGAGCAT ACTCACAGGC AGCAGCTACT GAAGTAGTAG 
    TATCAGAAGA TAGAAACGCT GGAACCTTTC CGTGAAGTTC TCACAAGTAT 
    TTTTAATACG AGATGGTGGT ACAATCTCAT GTGCCAAAAG TGTCTTCTAT 
    GTTTCAGTTA ATCTGTTGAT GTAGCATACC TTGGTTTACC TAGAGTGAAC 
    TCTTTTGATC C

    Gene models with high sequence identity

    1. AT5G58640.1 [+] show detail - Selenoprotein, Rdx type
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Selenoprotein, Rdx type 2.1e-58
    HMMPanther Selenoprotein T 9e-95
    HMMPfam Selenoprotein, Rdx type 1.1e-16

    See the detailed result >

    AT5G58640.1

    Model type
    Protein coding
    Short Description
    Selenoprotein, Rdx type
    Computational Description
    Selenoprotein, Rdx type; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein T (InterPro:IPR019389), Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: SELT-like protein precursor (TAIR:AT3G47300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR