F06411

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F06411

Determination of introduced cDNA(s)

  • RAFL06-69-D05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-D05 - Resource: pda03320

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-D05 - full reading 
    CTTCTCTCCT TCTCTCCCTT TTCTCTCTCT CTCGAAGATA TCGCCTTTAA 
    TTCCTTCTTC TTCTTCTGAT TTCTTCAAAG ATTCATTTCT TAGAGATCTC 
    AGCTTCTGTA AGAGTAGGCT AGCTACCAAA AAAAAAGAAA TAGAAAAAAA 
    CATTGATGCT TAATCAGCAG TTCTTGGTGT TTGAGACACA TGTCTCCAAT 
    AATACTCAGT GAGATCTTTC TCTCTGGGTT TATGTTAAAT TCCACAATCA 
    GGCGCAGGAC CCATCTTGTT CAATCTTTCT CTGTTGTCTT CCTTTACTGG 
    CTTTACTATG TCTCATGATC TCTGAACTTA TCTCCAGTTT TATATCTATA 
    CGCATAATTA CAACAAAACC CTAGTTTCTT TTCAAATTTC TCTTCTTCGT 
    TTTTCGTCAT CTGGGTCCTG TCCTGTTCTG TTGTGTCTTG TTCTGTTCTG 
    TTTTTAATTC CCCTAAAAAC CCATTTTAAA ATATTTTATC TCTCTTCTCT 
    TAAAAAAAAC TCTTCCCTGT TTTTGTTTGT GTGTTACTAA ATGGAATCGT 
    CGTCGTCGGG AACAACTTCG TCGACGATTC AAACGTCGTC AGGATCGGAG 
    GAGAGTCTCA TGGAGCAGAG GAAACGTAAA CGGATGCTCT CAAACCGTGA 
    ATCTGCAAGG AGATCAAGAA TGAAGAAACA AAAGCTCCTA GACGATCTAA 
    CGGCTCAGGT TAATCATCTG AAAAAAGAGA ACACGGAGAT CGTGACAAGT 
    GTCAGCATCA CAACGCAACA CTACCTAACC GTTGAAGCAG AGAACTCTGT 
    TCTCAGAGCT CAGCTTGATG AACTTAACCA CAGGCTCCAA TCTCTCAACG 
    ACATCATCGA GTTCCTCGAC AGTAGCAACA ACAACAACAA CAACAACATG 
    GGCATGTGTT CGAACCCTCT GGTTGGTTTG GAGTGTGATG ATTTCTTCGT 
    GAATCAGATG AACATGTCTT ATATTATGAA CCAGCCTCTC ATGGCGTCTT 
    CTGATGCTTT AATGTATTAA ATGTGGACCT AAAAACCCCC TCGAAATCAC 
    AAAGAAATGG GGCCGTTTTT ATTTGTCCGA TTTAGAGACA TGTCCAAAGA 
    GAGAGATTTA TATATAAAAA TGGGTCTGTT GTTTGATTTG TTTCCATTTC 
    AAATTTTTGT TTGTTTGGGT CCGTTTTAGG CGTTAGGTAT CTCTAAGCAT 
    CATCGTTATG AGTGTGTCTG TAATAAAGGC TCTGTTGCCG CATGAGTACA 
    AAGTGTTTTC TTAATATTGT AATATGCTTA TTACTTTCTT TTTATTCTTA 
    AGTACTATTA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT4G34588.1 [+] show detail - conserved peptide upstream open reading frame 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR19304:SF2 0.000309999945899369
    HMMPfam bZIP transcription factor, bZIP-1 4.40000000000001e-07
    HMMPanther PTHR19304 0.000309999945899369
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 0
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 4.80000830876748e-18
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0

    See the detailed result >

    AT4G34588.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 2
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF2 represents a conserved upstream opening reading frame relative to major ORF AT4G34590.1
    Computational Description
    conserved peptide upstream open reading frame 2 (CPuORF2); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 5 (TAIR:AT1G75388.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR