F06417

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06417

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06417

Determination of introduced cDNA(s)

  • RAFL05-05-M24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-05-M24 - Resource: pda01066

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-05-M24 - full reading 
    AGGGTTTTCT CAGCCGCTTA AGAGCTTATC ATCTTTGTGC TTCCTGCAAA 
    TAGCTCTTTG CTGTTGATCT TTCTCCTCCA TCAACAAACA TGGGTAAGAC 
    ACGTGGTATG GGAGCTGGGC GTAAGCTGAA GAGACTCCGA ATTAACCAGA 
    GGTGGGCTGA CAAGCAGTAC AAGAAGTCTC ACTTGGGAAA TGAGTGGAAG 
    AAGCCTTTTG CTGGTTCTTC TCACGCTAAA GGAATTGTTC TTGAGAAAAT 
    TGGTATTGAG GCTAAGCAGC CTAACTCTGC TATCCGTAAG TGTGCTAGAG 
    TTCAGCTTAT CAAGAATGGA AAGAAGATTG CTGCCTTTGT CCCCAATGAT 
    GGTTGTTTGA ACTACATCGA GGAAAACGAT GAGGTCTTGA TTGCTGGATT 
    TGGTCGTAAG GGTCACGCTG TGGGAGATAT TCCCGGAGTT AGGTTCAAGG 
    TCGTGAAGGT TTCTGGTGTT TCACTCTTGG CCCTCTTCAA GGAAAAGAAG 
    GAGAAGCCAA GATCTTAAGC AACCCGTACA AAAAGCTTCA AGCTTTTGAT 
    ATGGTTTTTG ATAGTTCAGT TTAAGTCTTG TTCTGTTCTA CTTTATGTTT 
    CAAGAACTTG ATTTTGTGTT ACATTTTATG AGTTTTTGAA TTAAGACATG 
    ATCGTTTAAT GTTATTGGTG TTTAATCAAT TTACTCTTTT AACCTAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G02960.1 [+] show detail - Ribosomal protein S12/S23 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S23, eukaryotic/archaeal 5e-59
    superfamily Nucleic acid-binding, OB-fold-like 5.5e-33
    PatternScan Ribosomal protein S12/S23 0
    HMMPanther 40S RIBOSOMAL PROTEIN S23 3.1e-55
    HMMPanther Ribosomal protein S12/S23 3.1e-55
    HMMPIR Ribosomal protein S12/S23 1.7e-48
    HMMPfam Ribosomal protein S12/S23 8.2e-41
    Gene3D Nucleic acid-binding, OB-fold 7.7e-22

    See the detailed result >

    AT5G02960.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S12/S23 family protein
    Computational Description
    Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT3G09680.1); Has 9074 Blast hits to 9071 proteins in 3107 species: Archae - 259; Bacteria - 5125; Metazoa - 487; Fungi - 294; Plants - 977; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR