F06418

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06418

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06418

Determination of introduced cDNA(s)

  • RAFL09-24-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-24-B02 - Resource: pda08060

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-24-B02 - full reading
    AACAAGTCAC ACACTTAAAA CAAAACAAAA CAAAACAAAA ACAGAGCACA 
    CAAAAAGAGA AACCAAGTTT TCTTAAAAAT GGAGCTAGAA TCTTCTCCTC
    CTCTACCTCC TCATGTGATG CTCGTATCTT TTCCAGGGCA AGGCCACGTT
    AATCCACTTC TTCGTCTTGG TAAGCTCTTA GCTTCAAAGG GTTTGCTCAT
    AACCTTCGTC ACCACTGAGT CATGGGGCAA AAAGATGCGA ATCTCCAACA
    AAATCCAAGA CCGTGTCCTC AAACCGGTTG GTAAAGGCTA TCTCCGGTAT
    GATTTCTTCG ACGACGGGCT TCCTGAAGAC GACGAAGCTA GCAGAACCAA
    CTTAACCATC CTCCGACCAC ATCTAGAGCT GGTCGGCAAA AGAGAGATCA
    AGAACCTTGT GAAACGTTAC AAGGAAGTAA CGAAACAGCC CGTGACATGT
    CTTATCAACA ACCCTTTCGT CTCTTGGGTC TGTGACGTGG CAGAAGATCT
    TCAAATCCCT TGTGCTGTTC TTTGGGTTCA ATCTTGTGCC TGCTTAGCTG
    CTTATTACTA TTACCACCAC AACCTAGTTG GCTTCCCGAC CAAAACAGAA
    CCCGAGATCG ATGTCCAAAT CTCTGGCATG CCTCTCTTGA AACATGACGA
    GATCCCTTCT TTCATTCACC CTTCAAGTCC TCACTCCGCT TTGCGAGAAG
    TGATCATAGA TCAGATTAAA CGGCTTCACA AGACTTTCTC CATTTTCATC
    GACACTTTCA ACTCATTGGA GAAAGACATC ATTGACCACA TGTCGACGCT
    CTCTCTCCCC GGTGTTATCA GACCGCTAGG ACCACTCTAC AAAATGGCTA
    AAACCGTAGC TTATGATGTC GTTAAAGTAA ACATCTCTGA GCCAACGGAT
    CCTTGCATGG AGTGGTTAGA CTCGCAGCCA GTTTCCTCCG TTGTTTACAT
    CTCATTCGGG ACCGTTGCTT ACTTGAAACA AGAACAAATA GACGAGATCG
    CTTACGGTGT GTTAAACGCC GACGTTACGT TCTTGTGGGT GATTAGACAA
    CAAGAGTTAG GTTTCAACAA AGAGAAACAT GTTTTGCCGG AAGAAGTTAA
    AGGGAAAGGG AAGATCGTTG AATGGTGTTC ACAAGAGAAA GTATTATCTC
    ATCCTTCAGT GGCATGTTTC GTGACTCACT GTGGATGGAA CTCAACGATG
    GAAGCTGTGT CTTCCGGAGT CCCGACGGTT TGTTTTCCTC AATGGGGAGA
    TCAAGTCACG GACGCCGTTT ACATGATCGA TGTTTGGAAG ACGGGGGTGA
    GGCTAAGCCG TGGAGAGGCG GAGGAGAGGT TAGTGCCGAG GGAGGAAGTT
    GCGGAGAGGT TGAGAGAGGT TACTAAAGGA GAGAAAGCGA TCGAGTTGAA
    AAAGAATGCT TTGAAGTGGA AGGAAGAGGC GGAGGCGGCG GTTGCTCGCG
    GTGGTTCGTC GGATAGGAAT CTTGAAAAGT TTGTGGAGAA GTTGGGTGCC
    AAACCTGTGG GGAAAGTACA AAACGGGAGT CATAATCATG TCTTGGCTGG
    ATCAATCAAA AGCTTTTAAA AAGTCATTTA AGTTTTTTTG TTTTTTGCCT
    TTGGTTTCTG CAAATTCGTA ATTGTGTTTG TATCCATCCT CCCATTGTGT
    TCTTTGTTTT TCTGTTTACT ATTTTTTTTT GGTATGGGTC TAGGGGAGAG
    TCAATGACCT TACTGAAGAA TGTCAGTCAC GCATTAAAAA ATATATTATT
    AATGGTTAAT ACTATATCTT GCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT3G21560.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UDP-GLUCOSYLTRANSFERASE 1.7e-127
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.7e-127
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.9e-51
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.1e-25
    Gene3D no description 3.7e-17

    See the detailed result >

    AT3G21560.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Curator Summary
    Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).
    Computational Description
    UGT84A2; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT4G15490.1); Has 7875 Blast hits to 7793 proteins in 474 species: Archae - 0; Bacteria - 315; Metazoa - 2199; Fungi - 84; Plants - 5106; Viruses - 112; Other Eukaryotes - 59 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR