F06420

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06420

Determination of introduced cDNA(s)

  • RAFL06-89-E02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E02 - Resource: pda17274

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E02 - full reading 
    CCCCCGAAAA CATTCCCTTA AAAACCTGAA GAGGATCCAA CAAGAACAAT 
    CTCTAATGGC GGTTTTTCAA AGGTTTAACA ATTTTTTTCC AAATCCGAAA 
    AAATCTCTTA ACAAAAAAAC TCCTTAATCT TCGTCATCTT TTTGTCTCTT 
    TTTAAAAAAT AATTAAACCC CACTTGATGA TTATCCCATT AATCATTTAA 
    AGGTTTTTTT TTTTCTTTTT GTTCAACGAA TCTCTATCTC TCTCTAGATT 
    TTGGGGATTT TGCTCTCTCT CCCTCTCTGT CTCTCTTTGG TGCTCGTAGC 
    TTTCTGTCTC CCAATTGAGA GAAGGAGGGA GATAGAAACG TCGATGGGCT 
    TAATTGTGGA TGATGATAAC GATGGAGAAG TTTTGATTCC GCCGCCGAAT 
    TTTTCAATGG TAGAAGATGA AATTTACCGA TCTGGGTTTC CTGAGCTGGA 
    GAATTTCGGA TTCTTATCAA CCCTAAATCT TCGATCCATC ATGTAAGATT 
    CTCTTCTTTC ATTCTTCTGA ATCTTTTGTT AAAAATTAAA AAAAGAAGAA 
    GAATCTTTTA TTTAATAACG CATCGTTGTC GTTGTTTATA GATAGACAGA 
    TTCCTTAAAT CACCACTTTC ACTTTCATGG CTTTTATTAG TTAAATGTCA 
    AAAAAATGTG GGATAATTAT ATATTTGTGT TGTTGAAATT TGACCCACGC 
    AGAAAGATTT GATTACAAAA ACGAGTTTTG TTTGTTGGGT TTGTCTGGAA 
    ACAGTTATCT GTGTCCTGAG CCATACCCTG AGGACAATCT CAAGTCTCTT 
    GCATCCAACA ACATTAAGCT TTTCCAGTTC GGGATTGAAG GCAAAACGGT 
    ATGATTTTCT AACCTTTATG ATTCATTCAA CAACAGCAAT TGTATTGAAT 
    CTTTTTGAGT TCTTCTTCAA GAACATTTGA CCCTGTTTTT AGTGTCTTGT 
    TGGCTTGTAG CATTTGAGTT GATGAATCTT ATAAGACCTT TAAGAAACAT 
    ATAAATACCC TGTTCTGTTC CTGTTATAGC TTCTTTGATT TCTGAGTTTG 
    GATTGTTTTA CTTTTACGCC AATAGGATCC TCCAACTCCT ATGCCAAAGG 
    ATACAGTGTT GAGTGCTCTT AGAGTACTAG TTGGTAAGGA ACCAGAAGAG 
    ACTCTTTGAT GTGTTGTCGG CTTTTCTCTT TTAGCTGTCT CATTAATTCT 
    TCTGTTTTTG CTAACAGATG TTCGAAATCA TCCAATTCTT ATCCACTGTA 
    AGCGCGGAAA GGTAACCAAA CCAAACCCTT CTCTTCCGGT TTAACAAGCT 
    TTAGGTTAAG TTAAGAGTGA TTTGAGTCCA ATGGTGCGTT TCTTCTGGCT 
    CATTGCAGCA TAGGACAGGT TGTCTTGTGG GATGCTTGAG GAAAGTGCAG 
    AACTGGTGCT TGTCATCGGT TCTCGAGGAA TACCAGAAGT GTGCGGGTTT 
    GAAATGGAGA CAAAGAGATT TAAGGTTCAT TGAGGATTTC GATGTGCTCA 
    GATTGAAGCA ATGTCTATAC AGCATCATAT ATCAGTACAA TGGGTATGGT 
    CTCAAGAGAA GAAAGTTGCT GTATCAAGAA GAGAATGTTG TTCAAGAACA 
    GCAAAAACCT CAAGCCACCA AAGGATAAAG AAAGAGATTT GAAATCGGAT 
    TTTTTTTTGT TTCTTTACAT TTTGTCGTGA TGATGATGAT GATTTTTTTG 
    AGAATAGGAT AGTTCTTTAA AAAGCTTGAG AAAACAGAGG ATTTGATTTG 
    GTCTCTCTCT ATCTTTTTTT TACGGTTAGA GAAATTTACA GATTGATTCT 
    TAATTGTTCA TAAGAAACTA ACATGTGTGA TGTGAGCTTT TGTTTTCCTA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT5G16480.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 8.5e-09
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 8.5e-09
    Gene3D no description 3.6e-09
    Gene3D no description 4.1e-11
    HMMPfam Protein-tyrosine phosphatase, SIW14-like 8.7e-11
    HMMPfam Protein-tyrosine phosphatase, SIW14-like 1.6e-14

    See the detailed result >

    AT5G16480.1

    Model type
    Protein coding
    Short Description
    Phosphotyrosine protein phosphatases superfamily protein
    Computational Description
    Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Tyrosine phosphatase family protein (TAIR:AT3G02800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR