F06425

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06425

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06425

Determination of introduced cDNA(s)

  • RAFL05-21-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-L05 - Resource: pda07481

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-L05 - full reading 
    ATTCCTCTTC GCCTTCCTAA GGAAAAAACA CTAGTCGCTC GCTGCTCTTC 
    AATTTTCTTC TCGAATCTAA TCGATTGATT TCTCCTTCGA TTCTTCAGGA 
    GAATCACTGA AGCTTTTGCC TCCCAAGTAG AAAGAGATAT GGCAACTCTT 
    GAAGATTCTT TCCTTGCTGA TTTGGACGAG TTATCTGACA ATGAAGCAGA 
    ATTGGACGAG AATGATGGTG ATGTTGGAAA GGAAGAAGAA GATGTTGATA 
    TGGATATGGC TGATTTAGAG ACACTTAACT ATGATGATCT CGATAATGTT 
    TCTAAGCTGC AGAAGAGTCA GAGATATGCT GATATTATGC ATAAAGTAGA 
    GGAGGCTCTT GGGAAAGATT CTGATGGAGC TGAGAAAGGA ACTGTCTTGG 
    AAGATGATCC TGAGTATAAG CTTATTGTGG ATTGTAATCA GCTTTCGGTC 
    GATATTGAGA ATGAAATCGT TATTGTCCAC AACTTTATCA AAGACAAGTA 
    CAAGCTTAAG TTTCAAGAGC TTGAGTCGTT GGTTCATCAC CCTATTGACT 
    ATGCATGTGT TGTGAAGAAG ATTGGGAATG AGACGGATTT GGCTCTTGTT 
    GATCTCGCTG ACCTTCTTCC TTCAGCTATT ATCATGGTTG TTTCAGTTAC 
    TGCTTTAACT ACGAAAGGGA GTGCACTGCC AGAGGATGTT TTGCAAAAGG 
    TGTTAGAGGC TTGTGATCGG GCTTTAGATC TTGATTCCGC AAGGAAGAAG 
    GTCCTTGAGT TTGTTGAAAG TAAGATGGGA TCTATTGCAC CTAATCTTTC 
    TGCTATTGTT GGGAGTGCTG TTGCAGCCAA ACTCATGGGG ACTGCTGGAG 
    GTTTGTCAGC ACTTGCTAAA ATGCCTGCGT GTAATGTTCA AGTTCTTGGC 
    CACAAGAGGA AGAACCTTGC TGGGTTTTCT TCTGCAACGT CTCAGTCCCG 
    TGTGGGTTAT CTGGAGCAGA CAGAGATTTA CCAAAGCACG CCTCCTGGAC 
    TTCAGGCTCG CGCTGGCAGG CTCGTGGCTG CAAAATCAAC TTTGGCAGCA 
    AGAGTTGATG CTACTAGAGG GGATCCGTTA GGGATAAGTG GAAAAGCTTT 
    CAGGGAGGAG ATCCGTAAGA AGATTGAGAA ATGGCAAGAA CCTCCTCCGG 
    CAAGACAGCC TAAGCCACTT CCTGTTCCTG ATTCTGAACC GAAGAAAAGA 
    AGGGGTGGTC GCCGTCTAAG AAAAATGAAA GAAAGGTATC AAGTAACAGA 
    TATGAGGAAG CTGGCCAACA GAATGGCGTT TGGTACACCT GAAGAGAGCT 
    CCCTCGGTGA TGGACTAGGA GAAGGTTATG GAATGCTTGG CCAGGCAGGA 
    AGCAACAGGC TGCGAGTATC CAGTGTTCCG AGCAAGCTTA AGATTAATGC 
    TAAGGTCGCC AAAAAGCTTA AAGAAAGGCA GTATGCGGGT GGTGCGACTA 
    CCTCTGGTTT GACATCGAGC CTGGCTTTCA CTCCTGTGCA GGGAATAGAG 
    TTGTGCAATC CTCAGCAGGC TTTAGGATTA GGAAGTGGGA CTCAAAGCAC 
    TTACTTCTCA GAGTCAGGAA CCTTCTCGAA GCTGAAGAAG ATCTAAAATA 
    TGGAAGACAG AGATACAAGT CTTGAAAAGC CGAGCACTAA AAGTGTAAAA 
    ATGAAACAAA GGTGGAAAGA AACTGCTTTC TCTATCTCAT GTCTGTTTTA 
    AGGTTTCTTC GGTCACTTAA GAGACAAAAG GCATTGTTTT GATCACTCTT 
    TGGAAACGTT TTATAAATTT TATTTTTGTA TTAGAGTCAA AAAAAAAAAA 
    AAAA

    Gene models with high sequence identity

    1. AT1G60170.1 [+] show detail - pre-mRNA processing ribonucleoprotein binding region-containing protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRE-MRNA SPLICING FACTOR PRP31 4.7e-241
    superfamily Nop domain 1.6e-66
    HMMPfam Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain 1.4e-49
    HMMPfam Prp31 C-terminal 4.9e-41
    HMMPfam NOSIC 1.5e-19

    See the detailed result >

    AT1G60170.1

    Model type
    Protein coding
    Short Description
    pre-mRNA processing ribonucleoprotein binding region-containing protein
    Computational Description
    embryo defective 1220 (emb1220); CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOSIC (InterPro:IPR012976), Prp31 C-terminal (InterPro:IPR019175); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70400.1); Has 1596 Blast hits to 1590 proteins in 356 species: Archae - 207; Bacteria - 2; Metazoa - 385; Fungi - 430; Plants - 224; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR