F06436

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06436

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06436

Determination of introduced cDNA(s)

  • RAFL05-04-M03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-M03 - Resource: pda00836

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-M03 - full reading 
    CCCACTTTTC CTTTGAGAAA ACTCAAAACA AAGTAAACAA ACAAACCAGA 
    AAAAGGAATG GCACTGAGAA TGTGGGCTTC CTCTACAGCA AATGCTCTCA 
    AGCTCTCTTC TTCTGCCTCC AAATCTCATC TCTTGCCAGC TTTCTCCATC 
    TCCAGATGCT TCTCCTCAGT GTTGGAAGGA CTTAAGTATG CAAATTCACA 
    TGAGTGGGTG AAACATGAAG GCTCAGTTGC TACAATTGGT ATCACTGACC 
    ATGCGCAGGA CCATTTAGGA GAAGTTGTGT TTGTGGAGCT GCCTGAAGCA 
    AACAGTTCAG TGAGCAAAGA AAAAAGCTTT GGAGCTGTTG AGAGTGTTAA 
    GGCCACAAGT GAGATTCTAT CTCCAATCTC TGGTGAAGTC ATTGAGGTTA 
    ACACAAAGCT CACCGAGTCA CCTGGTTTGA TCAACTCAAG CCCTTATGAA 
    GATGGTTGGA TGATAAAGGT GAAACCGAGC AGCCCCGCGG AGTTGGAAGC 
    TCTGATGGGT CCAAAGGAAT ACACCAAGTT CTGCGAAGAA GAAGACGCTG 
    CTCACTAGGG TTTCTTCGCC TTTTATCTTT CCCAAATGTT CGAAAAACAG 
    AGCAAAACAA GAGAATCCAT GCTTTAGTTT CAATCTTTCA TTTCTCAATG 
    TTTCTTACCA CTCTCAACTT GTATCAGTGT GATACTAATT TGATTAAAAG 
    ATCATCCAAT GAGACAC

    Gene models with high sequence identity

    1. AT1G32470.1 [+] show detail - Single hybrid motif superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0
    HAMAP Glycine cleavage H-protein 27.688
    HMMTigr Glycine cleavage H-protein, subgroup 2.5e-58
    superfamily Single hybrid motif 2.3e-47
    HMMPfam Glycine cleavage H-protein 5.7e-50
    Gene3D no description 7.8e-47
    HMMPanther Glycine cleavage H-protein 4.5e-67

    See the detailed result >

    AT1G32470.1

    Model type
    Protein coding
    Short Description
    Single hybrid motif superfamily protein
    Computational Description
    Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: glycine decarboxylase complex H (TAIR:AT2G35370.1); Has 7097 Blast hits to 7097 proteins in 2175 species: Archae - 168; Bacteria - 4510; Metazoa - 187; Fungi - 126; Plants - 207; Viruses - 0; Other Eukaryotes - 1899 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR