F06442

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	fruit (PO:0009001)	increased length (PATO:0000573) (Silique::Shape::long) increased thickness (PATO:0000591) (Silique::Shape::thick)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06442

Determination of introduced cDNA(s)

RAFL04-19-C23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-C23 - Resource: pda09260

full reading [+] show sequence

CTCTCTACTC GCCAAGAAGT TTCCTTTCCT TTGATTGCAC AACTAATCTC 
AAACTAAAAG ATCTTCTCTT TAGGCATACC CAGATCTTTC TCTCTCTAAA 
GTCTCCACCT TTCACGGTTT TTTGCTTCTC ACCTGAATCC AATCAATCTC 
GCCGGAGTGA ATTCACCTTC CTCCGGTTGA CTCGTCGGAC TTAGTCCGAC 
CTTTCAATTC GTAGATTCTG TTTACAATTC ACTGATCGTT TGATTAGAAA 
TGGGTTACTT GTTCTTCTAA GTCTCTCTTT AGCTGAAAGT TTGTTGCTTT 
ACGACTCTTC GATTTACCCT TACTTGTTCA AGTTCTTCAT CAAATTCGTA 
GTTATGGCGA TAAGAATCAC TTTCACTTAC TCCACCCATG TTGCTCGGAA 
TCTCGTCGGG ACCCGTGTTG GTCCCGGTGG TTACTGCTTT GAATCCTTGG 
TTCGTCCTAG ATTCTTCTCC CACAAGCGTG ATTTCGATAG ATCTCCTCGG 
AATCGACCTG CATCGATGTA TGGTAGCATC GCGAGGGAGC TCATCGGAGA 
AGGAAGTCAA AGCCCGCTTG TGATGGGTTT GATCTCGATA TTGAAGTCAA 
CGACGGGTCA TGAGTCGTCA ACGATGAATG TTCTGGGGGT TTCATCTTTC 
AAGGCTTCTT CTATTATTCC GTTTCTTCAA GGGTCGAAAT GGATTAAGAA 
TCCACCGGTG ATTGATGACG TGGATAAAGG AGGAACAGTT TGTGATGATG 
ATGATGATAA GGAATCGAGG AATGGAGGAA GTGGATGGGT TAATAAGCTT 
TTGAGTGTTT GTTCTGAGGA TGCTAAGGCT GCTTTCACGG CGGTTACTGT 
TTCTATCCTT TTTAGATCAG CTCTTGCGGA GCCAAAGTCG ATTCCTTCAA 
CGTCTATGTA CCCTACCTTG GACAAGGGTG ATCGCGTTAT GGCGGAGAAG 
GTCTCATACT TTTTCAGGAA GCCAGAGGTT TCAGATATAG TAATCTTCAA 
GGCTCCTCCA ATTTTGCTGG AATATCCGGA ATATGGCTAC AGTTCCAATG 
ATGTATTCAT AAAAAGGATA GTGGCAAGTG AAGGTGACTG GGTTGAAGTT 
CGTGATGGGA AGCTCTTTGT GAATGACATT GTGCAAGAAG AAGATTTTGT 
CTTAGAACCA ATGTCATATG AAATGGAACC AATGTTTGTC CCCAAAGGTT 
ATGTCTTTGT CCTTGGTGAT AACCGCAACA AAAGCTTTGA CTCTCATAAC 
TGGGGTCCAC TTCCAATAGA GAACATCGTT GGAAGATCTG TGTTCCGGTA 
CTGGCCACCG AGCAAAGTAT CAGACACCAT ATACCACGAC CAAGCTATCA 
CAAGGGGACC TGTTGCAGTT TCATGACAAA AGAAAGTTGG ATTTTTCTTA 
GGATTAAAGC ACAAGATTGT GCAAAACCAG TCTGGTCAGA ATTGGGTAGA 
CTTGGAATTG AAACTCAAAA CCGTTATGAT ATCTGCAGAT ACATACTGTA 
TCATCGTTAT GGATCGCATC TGGTTCTTAG CTGATGGTCG GGAAGCCGGA 
GATGTTACGT GTACAAAAGG AATGGAAGAT GCAAAGAAAA GGAAACGATT 
TACTGTGATT GTTATGTGTG AAAACCCTGG ACAAGATACT GTAGTAAAGC 
CATAAAGGCA ACTGTTAAAC AAAAGTGTGA TTTTTTGTTG TTATGAGTTT 
GTACTATAGA ATCGTGTAAA ACCTCCTTTG TGTTGTTGTA TGTAAATTGG 
GATATTGTTA T

Gene models with high sequence identity

AT2G30440.1 [+] show detail - thylakoid processing peptide
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SIGNAL PEPTIDASE I	2.4e-61
HMMPanther	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBR	2.4e-61
FPrintScan	Peptidase S26A, signal peptidase I	2.2e-16
FPrintScan	Peptidase S26A, signal peptidase I	2.2e-16
FPrintScan	Peptidase S26A, signal peptidase I	2.2e-16
Gene3D	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	8.7e-35
HMMPfam	Peptidase S26, conserved region	0.0000000000053
PatternScan	Peptidase S26A, signal peptidase I, serine active site	0
PatternScan	Peptidase S26A, signal peptidase I, conserved site	0
superfamily	Peptidase S24/S26A/S26B/S26C	2.1e-46
HMMTigr	Peptidase S26A, signal peptidase I	8.5e-44

See the detailed result >

AT2G30440.1

Model type: Protein coding
Short Description: thylakoid processing peptide
Curator Summary: Encodes a thylakoidal processing peptidase that removes signal sequences from proteins synthesized in the cytoplasm and transported into the thylakoid lumen.
Computational Description: thylakoid processing peptide (TPP); CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G06870.1); Has 9797 Blast hits to 9593 proteins in 2427 species: Archae - 0; Bacteria - 7318; Metazoa - 215; Fungi - 115; Plants - 235; Viruses - 0; Other Eukaryotes - 1914 (source: NCBI BLink).
Link: InterPro Scan - TAIR