F06442

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06442

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
  • increased thickness (PATO:0000591)
    (Silique::Shape::thick)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06442

Determination of introduced cDNA(s)

  • RAFL04-19-C23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-C23 - Resource: pda09260

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-C23 - full reading
    CTCTCTACTC GCCAAGAAGT TTCCTTTCCT TTGATTGCAC AACTAATCTC 
    AAACTAAAAG ATCTTCTCTT TAGGCATACC CAGATCTTTC TCTCTCTAAA
    GTCTCCACCT TTCACGGTTT TTTGCTTCTC ACCTGAATCC AATCAATCTC
    GCCGGAGTGA ATTCACCTTC CTCCGGTTGA CTCGTCGGAC TTAGTCCGAC
    CTTTCAATTC GTAGATTCTG TTTACAATTC ACTGATCGTT TGATTAGAAA
    TGGGTTACTT GTTCTTCTAA GTCTCTCTTT AGCTGAAAGT TTGTTGCTTT
    ACGACTCTTC GATTTACCCT TACTTGTTCA AGTTCTTCAT CAAATTCGTA
    GTTATGGCGA TAAGAATCAC TTTCACTTAC TCCACCCATG TTGCTCGGAA
    TCTCGTCGGG ACCCGTGTTG GTCCCGGTGG TTACTGCTTT GAATCCTTGG
    TTCGTCCTAG ATTCTTCTCC CACAAGCGTG ATTTCGATAG ATCTCCTCGG
    AATCGACCTG CATCGATGTA TGGTAGCATC GCGAGGGAGC TCATCGGAGA
    AGGAAGTCAA AGCCCGCTTG TGATGGGTTT GATCTCGATA TTGAAGTCAA
    CGACGGGTCA TGAGTCGTCA ACGATGAATG TTCTGGGGGT TTCATCTTTC
    AAGGCTTCTT CTATTATTCC GTTTCTTCAA GGGTCGAAAT GGATTAAGAA
    TCCACCGGTG ATTGATGACG TGGATAAAGG AGGAACAGTT TGTGATGATG
    ATGATGATAA GGAATCGAGG AATGGAGGAA GTGGATGGGT TAATAAGCTT
    TTGAGTGTTT GTTCTGAGGA TGCTAAGGCT GCTTTCACGG CGGTTACTGT
    TTCTATCCTT TTTAGATCAG CTCTTGCGGA GCCAAAGTCG ATTCCTTCAA
    CGTCTATGTA CCCTACCTTG GACAAGGGTG ATCGCGTTAT GGCGGAGAAG
    GTCTCATACT TTTTCAGGAA GCCAGAGGTT TCAGATATAG TAATCTTCAA
    GGCTCCTCCA ATTTTGCTGG AATATCCGGA ATATGGCTAC AGTTCCAATG
    ATGTATTCAT AAAAAGGATA GTGGCAAGTG AAGGTGACTG GGTTGAAGTT
    CGTGATGGGA AGCTCTTTGT GAATGACATT GTGCAAGAAG AAGATTTTGT
    CTTAGAACCA ATGTCATATG AAATGGAACC AATGTTTGTC CCCAAAGGTT
    ATGTCTTTGT CCTTGGTGAT AACCGCAACA AAAGCTTTGA CTCTCATAAC
    TGGGGTCCAC TTCCAATAGA GAACATCGTT GGAAGATCTG TGTTCCGGTA
    CTGGCCACCG AGCAAAGTAT CAGACACCAT ATACCACGAC CAAGCTATCA
    CAAGGGGACC TGTTGCAGTT TCATGACAAA AGAAAGTTGG ATTTTTCTTA
    GGATTAAAGC ACAAGATTGT GCAAAACCAG TCTGGTCAGA ATTGGGTAGA
    CTTGGAATTG AAACTCAAAA CCGTTATGAT ATCTGCAGAT ACATACTGTA
    TCATCGTTAT GGATCGCATC TGGTTCTTAG CTGATGGTCG GGAAGCCGGA
    GATGTTACGT GTACAAAAGG AATGGAAGAT GCAAAGAAAA GGAAACGATT
    TACTGTGATT GTTATGTGTG AAAACCCTGG ACAAGATACT GTAGTAAAGC
    CATAAAGGCA ACTGTTAAAC AAAAGTGTGA TTTTTTGTTG TTATGAGTTT
    GTACTATAGA ATCGTGTAAA ACCTCCTTTG TGTTGTTGTA TGTAAATTGG
    GATATTGTTA T

    Gene models with high sequence identity

    1. AT2G30440.1 [+] show detail - thylakoid processing peptide
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNAL PEPTIDASE I 2.4e-61
    HMMPanther PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBR 2.4e-61
    FPrintScan Peptidase S26A, signal peptidase I 2.2e-16
    FPrintScan Peptidase S26A, signal peptidase I 2.2e-16
    FPrintScan Peptidase S26A, signal peptidase I 2.2e-16
    Gene3D Peptidase S24/S26A/S26B/S26C, beta-ribbon domain 8.7e-35
    HMMPfam Peptidase S26, conserved region 5.3e-12
    PatternScan Peptidase S26A, signal peptidase I, serine active site 0
    PatternScan Peptidase S26A, signal peptidase I, conserved site 0
    superfamily Peptidase S24/S26A/S26B/S26C 2.1e-46
    HMMTigr Peptidase S26A, signal peptidase I 8.5e-44

    See the detailed result >

    AT2G30440.1

    Model type
    Protein coding
    Short Description
    thylakoid processing peptide
    Curator Summary
    Encodes a thylakoidal processing peptidase that removes signal sequences from proteins synthesized in the cytoplasm and transported into the thylakoid lumen.
    Computational Description
    thylakoid processing peptide (TPP); CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G06870.1); Has 9797 Blast hits to 9593 proteins in 2427 species: Archae - 0; Bacteria - 7318; Metazoa - 215; Fungi - 115; Plants - 235; Viruses - 0; Other Eukaryotes - 1914 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR