F06446

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06446

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06446

Determination of introduced cDNA(s)

  • RAFL05-10-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-N19 - Resource: pda02495

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-N19 - full reading 
    GACGCGATTG GGTAAGCGAT GCACATCGTC TTCTCTGTCG ATGATTTGAC 
    CGAATCCTTC TGGCCTGTTC CCGCTCCGGC GCCGTCGCCG GGATCGTCAT 
    CGACTCCGTC ACCGACGCAG AACGTGGCGG ATGGGATGAC TCGAAGTCAA 
    TCGGAGTGGG CGTTCCACAG GCTTATCAAT GAGTTGTCTG GTTCCGATTC 
    GAGCCCTACG ACTAACACAA TCGAGAGATC ACCTCCACCG GTTCAGTCTC 
    TTTCGAGATT AGAAGAAACC GTTGACGAAA CCGAAGATGT TGTTGAGATT 
    CAGAAACCGC AGAATCATCG ACGGCTCCCT GTTGATGATC AAGGGAAGAA 
    TCGGAATCGT GCTCCGTCGT CTGATCCGGT TGATTCTTCA GCTCCTGTTG 
    TTGTTGATCC TAATCAGTAT CATGCGATTC TTAAGAGCAA GCTCGAGCTT 
    GCTTGCGCTG CTGTTGCTCG TCGTGTGGGA ACTGTGAAAC CGGAAGATTC 
    GAGTGCTTCA GCTAGCAATC AAAAACAAGC TCAAGGCTCC ATTGTGGCAC 
    AAACCTCACC TGGTGCTTCA TCTGTTAGAT TTTCTCCCAC AACAAGCACG 
    CAAAAGAAAC CTGATGTTCC AGCCAGACAA ACTAGTATTT CATCACGAGA 
    TGATTCTGAT GACGATGATC TTGATGGAGA CGCAGATAAT GGAGATCCTA 
    CTGATGTGAA GCGTGCTAGG AGGATGCTCT CAAACCGAGA ATCCGCTAGG 
    CGCTCTAGGA GAAGAAAGCA AGAACAAATG AATGAATTTG ATACACAGGC 
    CAATTAAGAG CCGAGCATTC AACTTTAATT AATCGTCTTA GTGACATGAA 
    TCATAAGTAT GATGCAGCTG CTGTTGACAA CAGAATTCTA AGAGCTGATA 
    TCGAAACTTT GAGAACAAAG GTTAAGATGG CAGAGGAAAC TGTGAAAAGA 
    GTGACAGGAG TGAACCCTTT GCATTGGTCA AGACCAAACA TGGGCATACC 
    ATTCAGCAAC ACACCGAGTG CTTCCTCTAG TATTCCGCCA AACTCTAACC 
    ACATTTTGAA ACCAGCAAAT TCAAGTACCA ACACCAGTGC TGGTTTAGCA 
    CAAAATCAGA GAGTGGAGAC GGCAAATTTC TTGCCGGAAC AGGTGAACCG 
    TGAAGGCATG CAGAATCCAT TTGCTCCTGA TTCTAATCTG TATGAAACCC 
    TACCCCATTG GAATCACAAG CATTAACCAG AAAAAGAGTC ATTGGTTTTG 
    TGATTTTGAT TGAGGTAACT ATTGTCTGTA TTTTTATTTA CTGTATGACT 
    CAGCGACGGT AAACTCTTAA TATTATATAT ATGATTGGAC ATGATGGAT

    Gene models with high sequence identity

    1. AT3G54620.1 [+] show detail - basic leucine zipper 25
      E-value: 0; Score: 99.70

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 8.864
    HMMPfam bZIP transcription factor, bZIP-1 3.6e-08
    HMMPfam Basic leucine-zipper, C-terminal 1.3e-18

    See the detailed result >

    AT3G54620.1

    Model type
    Protein coding
    Short Description
    basic leucine zipper 25
    Curator Summary
    bZIP transcription factor-like protein mRNA
    Computational Description
    basic leucine zipper 25 (BZIP25); FUNCTIONS IN: protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G02640.2); Has 2261 Blast hits to 2259 proteins in 207 species: Archae - 2; Bacteria - 16; Metazoa - 141; Fungi - 138; Plants - 1903; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR