F06502

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06502

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06502

Determination of introduced cDNA(s)

  • RAFL05-02-D20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-D20 - Resource: pda00717

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-D20 - full reading 
    AACCTTAGGA AGAGCCATGG GTGAAGAAGC TATAGTTCTG TATCCTGCAC 
    CACCAATAGG TCACTTAGTG TCCATGGTTG AGTTAGGTAA AACCATCCTC 
    TCCAAAAACC CATCTCTCTC CATCCACATT ATCTTAGTTC CACCGCCTTA 
    TCAGCCGGAA TCAACCGCCA CTTACATCTC CTCCGTCTCC TCCTCCTTCC 
    CTTCAATAAC CTTCCACCAT CTTCCCGCCG TCACACCGTA CTCCTCCTCC 
    TCCACCTCTC GCCACCACCA CGAATCTCTC CTCCTAGAGA TCCTCTGTTT 
    TAGCAACCCA AGTGTCCACC GAACTCTTTT CTCACTCTCT CGGAATTTCA 
    ATGTCCGAGC AATGATCATC GATTTCTTCT GCACCGCCGT TTTAGACATC 
    ACCGCTGACT TCACGTTCCC GGTTTACTTC TTCTACACCT CTGGAGCCGC 
    ATGTCTCGCC TTTTCCTTCT ATCTCCCGAC CATCGACGAA ACAACCCCCG 
    GAAAAAACCT CAAAGACATT CCTACAGTTC ATATCCCCGG CGTTCCTCCG 
    ATGAAGGGCT CCGATATGCC TAAGGCGGTG CTCGAACGAG ACGATGAGGT 
    CTACGATGTT TTTATAATGT TCGGTAAACA GCTCTCGAAG TCGTCAGGGA 
    TTATTATCAA TACGTTTGAT GCTTTAGAAA ACAGAGCCAT CAAGGCCATA 
    ACAGAGGAGC TCTGTTTTCG CAATATTTAT CCAATTGGAC CGCTCATTGT 
    AAACGGAAGA ATCGAAGATA GAAACGACAA CAAGGCAGTT TCTTGTCTCA 
    ATTGGCTGGA TTCGCAGCCG GAAAAGAGTG TTGTGTTTCT CTGTTTTGGA 
    AGCTTAGGTT TGTTCTCAAA AGAACAGGTG ATAGAGATTG CTGTTGGTTT 
    AGAGAAAAGT GGGCAGAGAT TCTTGTGGGT GGTCCGTAAT CCACCCGAGT 
    TAGAAAAGAC AGAACTGGAT TTGAAATCAC TCTTACCAGA AGGATTCTTA 
    AGCCGAACCG AAGACAAAGG GATGGTCGTG AAATCATGGG CTCCGCAAGT 
    TCCGGTTCTG AATCATAAAG CAGTCGGGGG ATTCGTCACT CATTGCGGTT 
    GGAATTCAAT TCTTGAAGCT GTTTGTGCTG GTGTGCCGAT GGTGGCTTGG 
    CCGTTGTACG CTGAGCAGAG GTTTAATAGA GTGATGATTG TGGATGAGAT 
    CAAGATTGCG ATTTCGATGA ATGAATCAGA GACGGGTTTC GTGAGCTCTA 
    CAGAGGTGGA GAAACGAGTC CAAGAGATAA TTGGGGAGTG TCCGGTTAGG 
    GAGCGAACCA TGGCTATGAA GAACGCAGCC GAATTAGCCT TGACAGAAAC 
    TGGTTCGTCT CATACCGCAT TAACTACTTT ACTCCAGTCG TGGAGCCCAA 
    AGTGATCTTT GAAATTAAGT CTTGCATCAA TTAATAACTT TGTAGTCTCT 
    CAGAATCATG TCTTTGGGGG TTATTCGTTT TACTAGTTCA AAGTTATGTC 
    TCTGAGACCG CAGATGGAAA GAACAATTTA TACC

    Gene models with high sequence identity

    1. AT3G16520.3 [+] show detail - UDP-glucosyl transferase 88A1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UDP-GLUCOSYLTRANSFERASE 4.4e-121
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 4.4e-121
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.6e-39
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    Gene3D no description 4.6e-12
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.8e-29

    See the detailed result >

    AT3G16520.3

    Model type
    Protein coding
    Short Description
    UDP-glucosyl transferase 88A1
    Computational Description
    UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR