F06510

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06510

Determination of introduced cDNA(s)

  • RAFL09-48-P13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-P13 - Resource: pda06409

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-P13 - full reading 
    GTGCAAAAGA ACAGAATGAG TTCTAAGTTT GATATCGGCT CCTTAAGCAT 
    AGTAATGACT CTGCTTATTT GCTTCTTATT ATTATCTTTG GCTCCAAAAC 
    TTGAGGCTGA GCTCGCAACG GTCCAACATG CTCCAAACCC CGATGGCTCT 
    ATCAGTTTTC TGGTGATTGG AGATTGGGGT AGGCATGGAC TCTACAACCA 
    ATCCCAAGTT GCCCTCCAGA TGGGGAGAAT CGGGGAGGAG ATGGATATCA 
    ATTTTGTGGT ATCGACGGGT GATAACATCT ACGATAACGG GATGAAAAGT 
    ATCGATGATC CCGCCTTTCA ACTCTCCTTT AGTAATATCT ACACTTCTCC 
    TAGCCTGCAA AAGCCTTGGT ACCTTGTATT GGGGAATCAC GACTATAGAG 
    GAGATGTTGA GGCACAATTG AGTCCTATCC TCAGATCTAT GGATAGCCGT 
    TGGATTTGCA TGAGATCCTT CATCGTTGAC GCTGAGATCG CAGAGCTCTT 
    CTTTGTCGAC ACAACTCCTT TTGTAGATGC TTATTTCCTC AGTCCACAAG 
    ACCAAACTTA CGACTGGAGC GGCGTATCAC CGCGAAAATC CTACCTTCAG 
    ACCATCTTAA CGGAGTTGGA GATGGGTCTA AGAGAATCAA GTGCAAAATG 
    GAAAATTGTG GTGGGTCACC ATGCTATAAA GAGTGCTTCC ATTCATGGGA 
    ATACCAAAGA GCTTGAATCT CTCCTCTTAC CCATCCTTGA GGCGAATAAA 
    GTTGATCTCT ATATGAACGG TCATGATCAT TGCTTGCAAC ATATAAGCAC 
    ATCACAAAGC CCAATTCAGT TTCTAACGAG TGGTGGTGGG TCAAAGGCAT 
    GGAGAGGCTA TTACAATTGG ACAACACCAG AGGATATGAA ATTTTTCTAC 
    GATGGACAAG GTTTCATGTC AGTTAAGATC ACTAGATCAG AATTGAGTGT 
    CGTTTTTTAT GATGTCTCCG GCAATAGTTT GCATAAGTGG GACACATCGA 
    AAATGTTAGA CTCGGATTTT TATTTCCCAT TGTAATTCAC ATGAAAATCA 
    GTTAAAGCAC ATAAATTCTA CATATAAATA AATATGATTA CTATGAGTGG 
    TT

    Gene models with high sequence identity

    1. AT1G25230.1 [+] show detail - Calcineurin-like metallo-phosphoesterase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PURPLE ACID PHOSPHATASE-RELATED 4.6e-219
    HMMPanther TARTRATE-RESISTANT ACID PHOSPHATASE 4.6e-219
    superfamily Metallo-dependent phosphatases 2e-57
    Gene3D no description 7.9e-95
    HMMPfam Metallophosphoesterase 4e-16

    See the detailed result >

    AT1G25230.1

    Model type
    Protein coding
    Short Description
    Calcineurin-like metallo-phosphoesterase superfamily protein
    Computational Description
    Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 3 (TAIR:AT1G14700.1); Has 1153 Blast hits to 1147 proteins in 286 species: Archae - 1; Bacteria - 297; Metazoa - 336; Fungi - 8; Plants - 186; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR