F06615

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06615

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06615

Determination of introduced cDNA(s)

  • RAFL09-50-D22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-D22 - Resource: pda06445

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-D22 - full reading 
    AAATTTCGTC GTAATTGGCA ACAGTTAAGC TCTTTGCTAA AAGCTCTAGC 
    TGAGAAGCGA AATTCGAAGT GAAGAATGTC TAATCGCAAA TTCGGAATGG 
    AAGGATTCGG CATTAATCGG CAAACTAGCT ACAGTTTCGA GCGATCTCAA 
    GCACCGCAAC GTCTCTACGT CCCTCCCTCG TCTCGCGGCG GAGACAACTC 
    CGAAGATGCC GATCTTGATA ACATTGATTA CATGGAAAAC GAAGAAGCTG 
    AGGAAGATAT TGAGGAAGGC GGTTCTGCTG CGGCTAGCGG TGGCGAGGTT 
    GATGAGATCG ATCCATTAGA TGCTTTTATG GAGGGAATTC ACCAGGAGAT 
    GAAATCTGCT CCACCTCCTA AGCCAAAGGA GAAACTAGAG AGGTACAAGG 
    ACGACGATGA CGATCCTGTT GAGAGTTACC TCAAGGCCAA GAAGGATTTG 
    GGCCTGACAC TAGCCGCCGA TGCACTTAAC GCCGGTTATA ACTCCGACGA 
    GGAGGTGTAT GCTGCAGCTA AGGCGGTCGA TGCAGGGATG CTAGATTATG 
    ATTCCGATGA TAATCCGATT GTTGTGGATA AAAGGAAGAT TGAGCCTATT 
    ACAGCTCTGG ATCATAGCTC CATCGATTAT GAACCTATTA ATAAGGACTT 
    TTACGAGGAG CTAGAATCAA TATCAGGAAT GACTGAGCAA GAAACCACGG 
    ATTACCGTCA GAGATTAGGG ATTCGGGTCT CGGGTTTTGA TGTTCATAGG 
    CCAGTTAAGA CCTTTGAGGA TTGTGGATTT TCCTCACAGA TTATGAGTGC 
    TATCAAAAAG CAAGCTTATG AAAAACCTAC AGCAATCCAA TGTCAGGCTT 
    TACCTATTGT GTTGTCTGGT CGAGATGTTA TTGGCATAGC CAAAACTGGT 
    TCAGGTAAGA CTGCAGCGTT TGTTCTTCCA ATGATTGTTC ATATTATGGA 
    TCAGCCTGAA CTTCAGAGAG ATGAAGGTCC AATTGGTGTC ATATGTGCTC 
    CAACCAGAGA ATTGGCTCAT CAAATCTTCT TGGAAGCCAA GAAATTTTCG 
    AAAGCATATG GCTTACGAGT CTCTGCTGTG TATGGTGGAA TGTCTAAACA 
    TGAACAGTTT AAGGAACTCA AGGCAGGATG CGAAATAGTT GTTGCTACTC 
    CTGGAAGGTT GATAGACATG CTGAAGATGA AGGCTTTGAC AATGATGAGA 
    GCCAGTTATT TGGTTCTTGA TGAGGCAGAT CGGATGTTTG ACCTTGGCTT 
    TGAGCCACAA GTAAGGTCTA TTGTTGGCCA GATTCGTCCT GATCGCCAGA 
    CTTTACTATT TTCAGCCACT ATGCCTTGGA AAGTTGAAAA GTTAGCTAGG 
    GAAATCCTTT CAGATCCTAT TAGAGTCACA GTTGGTGAAG TGGGGATGGC 
    CAATGAAGAT ATTACGCAGG TTGTCAATGT CATACCTTCT GATGCTGAAA 
    AACTTCCCTG GCTACTTGAA AAGCTCCCTG GAATGATTGA TGAGGGTGAC 
    GTATTAGTGT TTGCATCTAA AAAGGCCACT GTTGATGAGA TTGAAGCTCA 
    ACTTACTCTA AATTCCTTCA AAGTTGCTGC TCTTCACGGT GATAAAGACC 
    AAGCATCACG AATGGAAACT CTGCAGAAGT TCAAATCTGG AGTTCACCAT 
    GTGCTGATTG CCACTGATGT TGCTGCCCGA GGTCTTGACA TCAAATCGCT 
    TAAGACAGTG GTTAACTATG ACATCGCAAA AGATATGGAC ATGCATGTAC 
    ATCGTATTGG TAGAACAGGC CGTGCCGGTG ACAGAGATGG GGTTGCCTAC 
    ACACTTGTTA CGCAGAGAGA GGCTAGATTT GCTGGTGAAT TGGTAAACAG 
    TCTGGTTGCT GCTGGTCAAA ATGTGCCTCC AGAACTCACA GATCTTGCCA 
    TGAAGGATGG ACGATTCAAG TCCAAGCGTG ACGGGAGAAA AGGAGGTAAG 
    AAAGGCCGAG GAGGAGGTGG TGGAAACAAA GGAGTACGTG GAGTTGATTT 
    TGGTCTTGGT ATTGGATTTA GCTCGGAATC TAGTAGGACA CCTTCTTCTA 
    AAGCTGCACC AAGTAGAAGT GGGGCAATCA ATTCAGTGAG AACTGGAGTA 
    ATGGCCCAAT TCAAGAATAG TTTTGTCGCT GCAACGCCAT CAAATCCACA 
    AAACCAAGCT TATCCAAACA AGAGACCATC CCTAATGGGC TTTGTCTCAG 
    GTGGTACTAT TGGTGGAGAC ATGGGTAGAA CTCAGAGTCA AGCTCCCCCA 
    GTAGCACCTA CTCAAAACGC CTCATCACAC AACTCCAGCC AGAATCACTC 
    ACAGAGTTCT GAGAATCGGC CTAGAGAGAG GAAGAGAAGA TCTGGTTGGG 
    ATAATTGAGT GAGCCACGTT TTGCATGATG ATAGTGGAAG TGTTTTGCAC 
    AACAATGTAA TGAATGTTGT ATAATTTGTT TTATCCTTTC CCGTTTCAGC 
    CTTTGAATAT ATAAATTTTC CATTTCTAAA AC

    Gene models with high sequence identity

    1. AT2G47330.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 32.232
    ProfileScan DNA/RNA helicase, C-terminal 21.399
    ProfileScan RNA helicase, DEAD-box type, Q motif 11.345
    superfamily P-loop containing nucleoside triphosphate hyd 2.9e-69
    superfamily P-loop containing nucleoside triphosphate hyd 2.4e-38
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 3.3e-50
    HMMPfam DNA/RNA helicase, C-terminal 1.2e-23
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    Gene3D no description 1.1e-72
    Gene3D no description 7.2e-38
    HMMSmart DEAD-like helicase, N-terminal 1e-64
    HMMSmart DNA/RNA helicase, C-terminal 9.7e-31
    HMMPanther DEAD (ASP-GLU-ALA-ASP) BOX POLYPEPTIDE 42 1.8e-277
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1.8e-277

    See the detailed result >

    AT2G47330.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR