F06625

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06625

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06625

Determination of introduced cDNA(s)

  • RAFL06-10-E18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-E18 - Resource: pda02979

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-E18 - full reading 
    AGAAATCGAA AAAATCAGAT CTAGATCTAA AAGAAGAGCG TCTTCATAAA 
    CGCCCTTCTT CTTCTTCGTC TTCTTCCCTG CAAATCTAGT TTCTAGATCT 
    TTTCTTTCTT CCGCGAAACG AAAATGAGAG AGTGCATTTC GATCCACATT 
    GGTCAGGCCG GTATCCAGGT CGGAAATGCT TGCTGGGAGC TTTACTGTCT 
    TGAACATGGC ATTCAGCCTG ATGGCCAGAT GCCGAGTGAC AAGACTGTTG 
    GCGGAGGTGA CGATGCTTTC AACACCTTCT TCAGTGAGAC CGGTGCAGGG 
    AAGCACGTCC CACGTGCTGT CTTTGTTGAT CTTGAGCCAA CTGTGATCGA 
    TGAGGTCAGG ACTGGTACTT ACCGTCAGCT TTTCCACCCT GAGCAACTCA 
    TCAGCGGTAA AGAAGACGCA GCTAACAATT TCGCCCGTGG GCATTACACC 
    ATTGGGAAAG AGATTGTTGA TCTGTGCTTG GACCGTATCA GAAAGCTCGC 
    TGATAACTGT ACTGGTCTCC AAGGATTCCT CGTCTTCAAC GCTGTTGGTG 
    GAGGGACTGG ATCTGGTCTT GGATCTCTCC TCCTTGAGAG ACTTTCTGTT 
    GACTACGGGA AAAAGTCCAA GTTGGGTTTC ACAGTTTACC CATCTCCACA 
    GGTCTCCACC TCTGTTGTTG AGCCTTACAA CAGTGTCCTC TCCACTCACT 
    CACTCTTGGA ACACACTGAT GTCTCTATCC TCCTCGACAA TGAAGCTATC 
    TATGACATCT GCAGACGTTC CCTAAGCATT GAGAGACCCA CCTACACCAA 
    CCTCAACCGT CTCGTCTCTC AGGTTATCTC ATCCTTGACT GCTTCTCTGA 
    GGTTCGATGG TGCCTTGAAT GTTGATGTGA CTGAGTTCCA AACCAACTTG 
    GTCCCATACC CAAGAATCCA CTTCATGCTT TCCTCCTATG CCCCAGTCAT 
    CTCCGCAGAG AAGGCCTTCC ATGAGCAGCT CTCGGTTGCT GAGATCACAA 
    ACAGTGCTTT TGAGCCAGCA TCCATGATGG CAAAGTGTGA CCCTCGTCAC 
    GGAAAGTACA TGGCTTGCTG TTTGATGTAC CGTGGTGATG TCGTCCCCAA 
    GGATGTGAAC GCAGCTGTTG GCACCATCAA GACCAAGCGT ACTATTCAGT 
    TTGTGGACTG GTGTCCTACT GGATTCAAGT GTGGAATCAA CTACCAGCCA 
    CCAACTGTTG TTCCAGGAGG TGATCTTGCT AAAGTCCAGA GAGCTGTGTG 
    TATGATCTCA AACTCCACCA GTGTTGCTGA GGTGTTCTCC CGTATTGATC 
    ACAAGTTTGA TCTTATGTAC GCAAAACGTG CTTTCGTTCA CTGGTATGTG 
    GGTGAGGGTA TGGAAGAAGG AGAATTTTCA GAGGCTCGTG AGGATCTTGC 
    AGCATTGGAG AAGGATTACG AAGAGGTTGG TGCTGAAGGT GGTGACGATG 
    AGGATGATGA AGGAGAGGAG TACTAAGAAG GTTGTCGGTT TTATGTGGGA 
    TTTCTATTAT CTCGTGTTTG TGTGAATAGG CTCGAAACTC TTACGAGTCG 
    TACTTGTGTT TTCAAAAACC ATATTTCTAT CTCTTGCTTG TGGCGGTAGC 
    CATTTGTTC

    Gene models with high sequence identity

    1. AT1G50010.1 [+] show detail - tubulin alpha-2 chain
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Tubulin/FtsZ, N-terminal 8.6e-104
    superfamily Tubulin/FtsZ, C-terminal 3.7e-83
    HMMPanther Alpha tubulin 8.8e-236
    HMMPanther Tubulin 8.8e-236
    Gene3D Tubulin/FtsZ, GTPase domain 2.2e-120
    Gene3D Tubulin/FtsZ, 2-layer sandwich domain 1.2e-47
    Gene3D no description 1.1e-21
    PatternScan Tubulin, conserved site 0
    Coil coiled-coil 0
    HMMSmart no description 1.9e-73
    HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.7e-52
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Alpha tubulin 2.5e-119
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    FPrintScan Tubulin 8.9e-92
    HMMPfam Tubulin/FtsZ, GTPase domain 4.2e-70
    HMMPfam Tubulin/FtsZ, 2-layer sandwich domain 1.4e-50

    See the detailed result >

    AT1G50010.1

    Model type
    Protein coding
    Short Description
    tubulin alpha-2 chain
    Curator Summary
    Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins.
    Computational Description
    tubulin alpha-2 chain (TUA2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-4 chain (TAIR:AT1G04820.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR