F06635

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06635

Determination of introduced cDNA(s)

  • RAFL05-15-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-F19 - Resource: pda02641

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-F19 - full reading 
    ACAATCTATC AACAGTTTTA AAAAAAGACA TAACTCAACC AATCTCACTT 
    TGAAAAAGAC ATGAACAAAA CCCGCCTTCG TGCTCTCTCC CCACCTTCCG 
    GTATGCAACA CCGTAAGAGA TGTCGATTGA GAGGTCGAAA CTACGTAAGG 
    CCAGAAGTTA AACAACGCAA CTTCTCAAAA GATGAAGACG ATCTCATCCT 
    CAAGCTTCAT GCACTTCTTG GCAATAGATG GTCATTGATA GCGGGAAGAT 
    TGCCAGGACG AACCGACAAC GAAGTTAGGA TCCATTGGGA AACTTACCTA 
    AAAAGGAAGC TCGTAAAAAT GGGAATCGAC CCAACCAATC ATCGTCTCCA 
    CCATCACACC AACTACATTT CTAGACGTCA CCTCCATTCT TCACATAAGG 
    AACATGAAAC CAAGATTATT AGTGATCAAT CTTCTTCGGT ATCCGAATCA 
    TGTGGTGTAA CAATTTTGCC CATTCCAAGT ACCAATTGCT CGGAGGATAG 
    TACTAGTACC GGACGAAGTC ATTTGCCTGA CCTAAACATT GGTCTCATCC 
    CGGCCGTGAC TTCTTTGCCA GCTCTTTGCC TTCAGGACTC TAGCGAATCC 
    TCTACCAATG GTTCAACAGG TCAAGAAACG CTTCTTCTAT TCCGATGAGA 
    AATGGTGTAT TTGTTTGTAC ACATTTGTTA TATTACAAAT GCACATATTA 
    TAATATTCG

    Gene models with high sequence identity

    1. AT1G71030.1 [+] show detail - MYB-like 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Myb, DNA-binding 4.2e-13
    HMMSmart SANT, DNA-binding 5.2e-15
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 24.468
    HMMPanther Myb transcription factor 8.3e-40
    superfamily Homeodomain-like 7.8e-16
    Gene3D Homeodomain-related 9.5e-15

    See the detailed result >

    AT1G71030.1

    Model type
    Protein coding
    Short Description
    MYB-like 2
    Curator Summary
    Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves.
    Computational Description
    MYB-like 2 (MYBL2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3 (TAIR:AT1G22640.1); Has 6938 Blast hits to 6802 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 361; Fungi - 142; Plants - 5491; Viruses - 3; Other Eukaryotes - 941 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR