F06639

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06639

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06639

Determination of introduced cDNA(s)

  • RAFL05-21-A06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-A06 - Resource: pda17140

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-A06 - full reading 
    GGCTTCCCCT TGGCCGGCTA TAAATCGATA ACCTCACCGA TAAATCCTCT 
    ATTCATCATC CACAACAAAC CTCTTCTTCA GTCTGATAGA GATCTCACGT 
    TTCAAACAAC AAGAATGGCG TTCCCTAAGG TATACTTCGA CATGACCATC 
    GACGGCCAGC CCGCGGGAAG GATCGTGATG GAGCTGTACA CCGATAAGAC 
    TCCCAGGACT GCCGAGAATT TCAGAGCTCT CTGCACCGGA GAGAAAGGTG 
    TTGGCGGTAC CGGAAAACCC CTTCACTTCA AGGGATCTAA GTTTCACCGT 
    GTGATCCCTA ACTTCATGTG CCAGGGAGGA GATTTCACCG CCGGGAACGG 
    AACAGGCGGT GAGTCGATCT ACGGGAGCAA GTTCGAGGAC GAGAATTTCG 
    AGAGGAAGCA CACCGGACCG GGGATCCTGT CGATGGCGAA CGCCGGTGCA 
    AACACGAACG GATCTCAGTT CTTCATCTGC ACCGTGAAGA CCGATTGGCT 
    TGATGGGAAG CACGTGGTGT TTGGGCAGGT CGTGGAAGGC TTAGACGTGG 
    TAAAGGCCAT CGAGAAGGTT GGATCATCAT CTGGAAAGCC GACGAAGCCT 
    GTGGTTGTTG CCGATTGTGG TCAGCTCTCT TAGGATCTTC CTATCATCAT 
    CCTTAATTTA GCATCATCGT CGTCATTGTG GTGTCTCTTT ATGCTTTTGC 
    TTTTGTTATG GAGTCTTTTT AAAATTTGTA GTCATAAGTT TGGTGTGTGT 
    TCTCATGGGA ACATATATAA ACTTGCCCCT TTAATAAAAA AACAAA

    Gene models with high sequence identity

    1. AT4G38740.1 [+] show detail - rotamase CYP 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-41
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.7e-69
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 46.772
    HMMPanther CYCLOPHILIN 3.9e-123
    HMMPanther CYCLOPHILIN 3.9e-123
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.6e-48
    superfamily Cyclophilin-like 4.2e-77

    See the detailed result >

    AT4G38740.1

    Model type
    Protein coding
    Short Description
    rotamase CYP 1
    Curator Summary
    Encodes cytosolic cyclophilin ROC1.
    Computational Description
    rotamase CYP 1 (ROC1); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16514 Blast hits to 16480 proteins in 2670 species: Archae - 108; Bacteria - 6825; Metazoa - 2927; Fungi - 1383; Plants - 1289; Viruses - 4; Other Eukaryotes - 3978 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR