F06716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06716

Determination of introduced cDNA(s)

  • RAFL05-08-I06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-I06 - Resource: pda01189

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-I06 - full reading 
    ATATCAAACT TCAAAAGCGT CAAACATAAA GTTAGGCCAA GAAACCCATT 
    TAAAAAAAAA AAGAGAGAGA GATGGAGAGT TTCCCGATCA TCAATCTCGA 
    GAAGCTTAAT GGAGAAGAGA GAGCAATCAC TATGGAGAAG ATCAAAGACG 
    CTTGTGAAAA CTGGGGCTTC TTTGAGTGTG TGAACCATGG GATTTCACTC 
    GAGCTTTTGG ACAAAGTGGA GAAGATGACC AAGGAACATT ACAAGAAGTG 
    CATGGAAGAG AGATTCAAGG AATCGATTAA GAACAGAGGT CTTGACTCTC 
    TTCGCTCTGA AGTCAACGAC GTTGACTGGG AATCCACTTT CTACCTCAAG 
    CACCTTCCCG TCTCTAATAT CTCCGATGTC CCTGATCTCG ACGACGATTA 
    CAGAACGTTA ATGAAAGACT TCGCCGGAAA GATAGAGAAG TTGTCGGAGG 
    AGCTACTGGA TCTGCTGTGC GAGAATCTCG GTTTAGAGAA GGGTTATTTA 
    AAAAAGGTGT TTTACGGGTC GAAAAGACCG ACTTTTGGAA CCAAAGTCAG 
    CAATTATCCA CCTTGTCCTA ATCCGGACCT AGTCAAGGGT CTCCGAGCCC 
    ACACCGACGC CGGCGGCATC ATCCTCCTCT TCCAAGACGA CAAAGTCAGT 
    GGACTTCAGC TTCTTAAAGA CGGCGAGTGG GTCGATGTTC CTCCGGTTAA 
    GCATTCAATC GTCGTTAATC TCGGCGATCA ACTTGAGGTG ATAACCAATG 
    GGAAGTACAA GAGTGTGGAA CATAGAGTGC TATCTCAGAC AGACGGAGAA 
    GGAAGAATGT CGATCGCATC ATTCTATAAT CCGGGAAGCG ACTCTGTTAT 
    TTTTCCGGCG CCGGAGCTGA TCGGAAAAGA AGCAGAGAAG GAGAAGAAAG 
    AGAACTATCC GAGATTTGTG TTTGAAGATT ACATGAAACT CTGCTCTGCT 
    GTCAAGTTTC AGGCCAAGGA ACCAAGGTTT GAAGCCATGA AAGCTATGGA 
    GACAACTGTG GCCAACAATG TTGGACCATT GGCCACTGCG TGAATGATAT 
    GTAACTGGTT AATAAATATA TATATATATA TATATATAGT CTTTATATAA 
    TGTCTTAGAA ACTTGATTAT TCACTATACG AATAATTTTG TTCATGTTGT 
    TGTATGTTTA AGTGGTGAAT GTGTTTTATA TATGGGAATT AATGTTTTCT 
    GTTCCAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G05010.1 [+] show detail - ethylene-forming enzyme
      E-value: 0; Score: 99.75

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Clavaminate synthase-like 4.3e-91
    HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 2.9e-207
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 2.9e-207
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.8e-23
    Coil coiled-coil 0
    Gene3D no description 3.8e-92

    See the detailed result >

    AT1G05010.1

    Model type
    Protein coding
    Short Description
    ethylene-forming enzyme
    Curator Summary
    Encodes 1-aminocyclopropane-1-carboxylate oxidase
    Computational Description
    ethylene-forming enzyme (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8587 Blast hits to 8552 proteins in 1009 species: Archae - 0; Bacteria - 1142; Metazoa - 103; Fungi - 1035; Plants - 4924; Viruses - 0; Other Eukaryotes - 1383 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR