F06718

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06718

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06718

Determination of introduced cDNA(s)

  • RAFL09-18-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-I18 - Resource: pda02186

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-18-I18 - full reading 
    AAAGCGACGC CGTTTTAAAG GAGATGGATA AACAACCGGC GACCAGTTGG 
    AGTATCCATA CCCGGCCGGA GATAATCGCC AAGTACGAGA TCTTCGAGCG 
    AGTCGGATCC GGAGCTTACG CCGACGTTTA CAGAGCTCGC CGTCTCTCCG 
    ACGGTCTAAT CGTCGCGCTC AAGGAGATTT TCGATTACCA ATCTGCGTTC 
    CGGGAGATTG ACGCGCTCAC CATCCTCAAT GGATCTCCTA ATGTAGTTGT 
    TATGCACGAA TACTTCTGGC GTGAGGAAGA GAACGCTGTG CTTGTGCTTG 
    AGTTTCTTAG GTCGGATCTC GCTGCGGTGA TCCGAGATGG TAAGAGGAAG 
    AAGAAGGTAG AAGGAGGGGA TGGATTCTCG GTTGGGGAGA TTAAGAGATG 
    GATGATTCAG ATTTTAACCG GTGTTGATGC TTGTCATCGG AATTTGATTG 
    TACATAGAGA TTTGAAGCCT GGGAATATGT TGATTTCTGA TGATGGAGTT 
    CTTAAGCTTG CTGATTTTGG TCAGGCTAGG ATACTCATGG AGCATGATAT 
    TGTAGCTTCA GATGAAAACC AACAAGCTTA CAAACTGGAA GACAAAGATG 
    GAGAAACCAG CGAACCACCA GAAGTTATTC CTGATTATGA GAACTCACCT 
    AGGCAAGGGT CTGATGGTCA GGAACGGGAA GCGATGAGTA AAGACGAGTA 
    CTTCCGACAG GTGGAAGAGC TCAAGGCTAA ACAGGTTGTT AGAGATGATA 
    CTGATAAGGA CTCGAATGTG CATGATGGAG ACATATCTTG CCTTGCAACG 
    TGCACTGTTA GTGAAATGGA TGATGATCTC GGTAGGAACT CGTTTTCTTA 
    CGATGCTGAC GAAGCAGTGG ATGATACACA GGGTTTGATG ACATCTTGTG 
    TGGGAACCCG ATGGTTTAGG CCACCAGAAC TGCTCTATGG ATCTACGATG 
    TATGGGTTAG AGGTCGATCT ATGGTCGCTT GGTTGTGTGT TTGCAGAACT 
    CTTGTCTCTT GAGCCTTTGT TCCCAGGAAT TTCAGATATT GATCAGATCA 
    GCAGAGTGAC CAATGTGCTG GGAAATTTAA ATGAAGAGGT CTGGCCTGGT 
    TGTGTTGATC TTCCAGACTA CAAGTCAATC TCATTTGCTA AAGTAGAATC 
    TCCTCTTGGT ATTGAAGGAT GCCTTCCCAA CCATTCAGGG GATGTGATAT 
    CGCTGCTCAA GAAGCTTATC TGTTATGATC CAGCTAGTAG AGCTACTACT 
    ATGGAGATGC TGAATGACAA ATATTTAAGT GAAGAGCCTC TTCCAGTTCC 
    AGTTTCAGAG CTCTATGTGC CTCCGACAAT GAGTGGACCA GATGAGGATT 
    CTCCGAGAAA GTGGAATGAT TACAGAGAAA TGGATTCAGA TTCAGATTTT 
    GATGGCTTTG GACCCATGAA TGTAAAGCCT ACCAGTAGTG GATTTACAAT 
    AGAATTCCCC TGACCTTGGC ATTTAAGAGT CCATGGTTGA GCATCTTGAT 
    CATCCCGACT TCCCCTGAAT TCGCCTACTT TGTCAAAAAT GTGTTGTGTG 
    TGTGTGTGTG TTGTTCCTCT CTCTCTGCCT CCCTCGTATG AAAATGGTAA 
    CATTTACAAT TGGAAAGTCG GTGTTAGCCT TTAGCTATTA GCTGAAGAGC 
    TAGTTTTCTT GTTGCCCAGG CCATTCTTTA CCCTATTTTT CATCTGAAGT 
    AACAATGAAA CAAAATCTAT ATATACTCGA GTTTTG

    Gene models with high sequence identity

    1. AT4G28980.1 [+] show detail - CDK-activating kinase 1AT
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CAK1 2.9e-189
    HMMPanther CDC2, MAP KINASE-RELATED 2.9e-189
    HMMSmart Serine/threonine-protein kinase domain 3e-68
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.00015
    HMMPfam Serine/threonine-protein kinase-like domain 1.7e-29
    HMMPfam Serine/threonine-protein kinase-like domain 5e-19
    Gene3D no description 8.6e-13
    Gene3D no description 3e-51
    superfamily Protein kinase-like domain 3.9e-74
    ProfileScan Protein kinase, catalytic domain 37.418
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT4G28980.1

    Model type
    Protein coding
    Short Description
    CDK-activating kinase 1AT
    Curator Summary
    Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.
    Computational Description
    CDK-activating kinase 1AT (CAK1AT); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;3 (TAIR:AT1G18040.1); Has 87352 Blast hits to 72841 proteins in 3452 species: Archae - 58; Bacteria - 8929; Metazoa - 34591; Fungi - 11921; Plants - 15740; Viruses - 134; Other Eukaryotes - 15979 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR