F06737

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06737

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06737

Determination of introduced cDNA(s)

  • RAFL09-38-M21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-38-M21 - Resource: pda06195

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-38-M21 - full reading 
    ATGAGAGATA GACAGAGAGG GAAAACAACT ACACAAGTCA AAATTTCTGT 
    TCTAAAAAAG TAAAAGAAGT ATGGTGGAGG AAACGAGCTC TGGTGGTGGC 
    TCATCGGCTT CTCCGATCAA AACCATCGTC GTTTTGGTTC AGGAGAACAG 
    GTCGTTCGAT CACATGTTAG GTTGGTTCAA GGAGCTTAAC CCAGAAATCG 
    ATGGAGTATC CGAATCCGAA CCAAGATCCA ACCCACTTTC TACATCTGAC 
    CCGAACTCTG CTCAAATCTT CTTCGGCAAA GAATCTCAGA ACATTGATCC 
    TGATCCCGGT CACTCTTTTC AGGCGATCTA CGAACAAGTG TTTGGAAAAC 
    CATTCAGCGA CGAGAGTCCG TACCCGGATC CGAAGATGAA CGGGTTCGTA 
    CAAAACGCAG AGGCGATAAC AAAAGGGATG TCGGAGAAAG TAGTGATGCA 
    AGGTTTTCCG CCGGAGAAAC TTCCGGTATT CAAGGAACTA GTTCAAGAAT 
    TCGCTGTCTG CGATCGGTGG TTCTCGTCGT TGCCCTCGTC CACGCAGCCT 
    AACCGACTCT ACGTCCACGC GGCGACATCA AACGGTGCGT TTAGTAATGA 
    CACTAACACG CTTGTTCGTG GCTTTCCTCA GAGGACAGTG TTCGAATCAC 
    TTGAAGAGAG CGGTTTCACA TTTGGAATTT ATTACCAATC CTTTCCTAAT 
    TGCCTCTTTT ACAGGAACAT GAGGAAACTG AAGTACGTGG ACAACTTCCA 
    TCAATACCAC TTAAGCTTCA AGAGGCATTG CAAAGAAGGG AAGCTTCCAA 
    ACTATGTGGT TATAGAACCA AGGTACTTCA AGATTTTGTC GGCTCCAGCT 
    AATGATGACC ATCCCAAAAA CGACGTCGTT GAAGGCCAAA ATCTAGTCAA 
    AGAAATCTAC GAAGCCTTAA GAGCTAGTCC TCAGTGGAAC GAGATTCTCT 
    TCGTTGTTGT TTATGATGAA CATGGTGGTT ATTATGACCA CGTCCCTACT 
    CCAGTCATTG GTGTCCCAAA TCCTGATGGT CTAGTTGGAC CTGAGCCCTA 
    TAACTTTAAG TTTGACCGGC TTGGTGTTAG GGTTCCTGCT TTGCTAATCT 
    CGCCTTGGAT CGAACCTGGA ACGGTGTTAC ACGAGCCAAA TGGACCAGAG 
    CCAACGTCGC AGTTCGAACA TTCATCAATT CCGGCAACAC TGAAGAAAAT 
    ATTCAACCTC AAGAGCTTTC TTACAAAGCG TGACGAATGG GCTGGAACAC 
    TCGATGCTGT CATCAACCGG ACCAGCCCAA GGACGGACTG CCCCGTCACA 
    TTACCGGGAC TTCCTAGGGC AAGAGACATA GACATTGGAA CACAAGAAGA 
    AGACGAAGAT CTCACTGATT TTCAAATCGA ACTGATTCAA GCAGCGGCTG 
    TACTAAAAGG AGATCATATC AAAGACATTT ACCCGTTTAA GCTCGCAGAT 
    AAAATGAAGG TTTTGGATGC GGCTAGGTAC GTAGAAGAAG CTTTCACTAG 
    ATTCCATGGT GAGTCCAAGA AGGCTAAAGA AGAAGGCCGT GATGAGCATG 
    AGATCGTTGA TCTTTCTAAA GGATCTACTC GTCACTCGAC TCCTAAGTCT 
    TTTGTTCAGA AGTTATTCTC GTGTTTGATT TGTGATAATT GATCTTGAGT 
    TGAAACAGAT TTGATCTCTG TGAGATTTGG TGTATTTCTC GGATTTTATG 
    TGAAGAGCGT TTGAAATTTG ATATTTGTTT GTTTTCCAAA AAAAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT3G03520.1 [+] show detail - non-specific phospholipase C3
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    See the detailed result >

    AT3G03520.1

    Model type
    Protein coding
    Short Description
    non-specific phospholipase C3
    Curator Summary
    Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses. Role in lipid synthesis.
    Computational Description
    non-specific phospholipase C3 (NPC3); FUNCTIONS IN: hydrolase activity, acting on ester bonds, Lysophosphatidic acid phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, phosphate metabolic process, response to abiotic stimulus; LOCATED IN: vacuole, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C4 (TAIR:AT3G03530.1); Has 2235 Blast hits to 2112 proteins in 404 species: Archae - 32; Bacteria - 1866; Metazoa - 0; Fungi - 127; Plants - 159; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR