F06813

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06813

Determination of introduced cDNA(s)

  • RAFL04-16-L01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-L01 - Resource: pdz87399

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-16-L01 - 5 prime EST
    ATGTCTCTTG CATCCCAAAT ACAAGTCGTC TCGTTCAAGC ACATATGAGA 
    AGAATGGAAA AGCNTGCCGC AATTCATTAC NGGCACTGGA GCAATTGCTG
    GTTTTTTTAG TAATGATGCT GTCACAGTTG GCGATTTAGT TGTCAAGGAT
    CAGGAGTTTA TCGAGGCAAC CAAGGAGCCT GGTATAACAT TTGTTGTAGC
    TAAATTTGAT GGTATCCTTG GTCTTGGATT CCAAGAGATC TCTGTTGGAA
    AAGCTGCTCC TGTTTGGTAC AACATGCTCA AGCAAGGCCT TATCAAGGAG
    CCGGTTTTTT CATTTTGGCT TAACCGTAAT GCAGATGAAG AAGAAGGTGG
    TGAACTTGTA TTTGGAGGTG TTGATCCAAA TCATTTCAAG GGCAAACATA
    CATATGTTCC TGTGACACAA AAGGGCTACT GGCAGTTTGA CATGGGTGAT
    GTTCTTATTG GCGGTGCACC CACTGGGTTC TGTGAAAGTG GCTGTTCTGC
    GATAGCAGAT TCTGGTACAT CTTTGCTTGC CGGTCCAACG ACTATNATCA
    CCATGATAAA CCATGCTATT GGAGCAGCTG GAGTTGTTAG CCAGCAGTGC
    AAGACTGTTG TGGATCAATA CGGGCAGACC ATTTTTGGAT TTACTTTTGT
    CTGAG

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 99.39

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-16-L01 - 3 prime EST
    GGAGATAAAG CGAGCTTGAC CATTTTCAAA TTTTTTATGC TACACCGTTT 
    TTACCGAACC ATTTGATACA ACTTACTAAG CATAAACAAA AGAGGCAGGC
    TTTATTAAAG TTTTCAGTTT TTTCACCATC GAACTTACTT AGAAGGTATT
    TACAAAGCCA ATGCCTTCAA AACTACAAAG GCCTTTTTTC GTTAGGAAAC
    AACTTAAAAG GAACTGCGCC ACCATTTCTA CTACGACTCA AAGTCCTCAA
    CTCCAGAAAA CATACAAACA ACACTTGAGA CGCAGATTGT TCATACTAAA
    ACCATACGCG ACACCAACCC GATCGTGTTT AGGCTGCCTC TGCAAACCCG
    ACCTGTTCGT TACCAAAGTC AAATACGGTG TGGTATTTGC CCATGAACAC
    ATCTCCCAAG ATCCAGAGAG GTCCACGAGG TGGAGCAACG TCAAGAGCAA
    TAAAACCACT GATGCACTGT GCCACAGGTC CCTCACCAAC TTTCAGAACA
    TACTCTTCTG GAGCAAGATC AAATACTTTG CCTCCAATGG TAAGTGAAAC
    AGTGGGCATT GTTGACAGTT GTGCACAGTC AACTGCAGAC TCTCCCATTG
    GGCTGGGGAG GCGTTCACAT AGCTCGTTGA CGTAGTTCAA TATGCGCTCT
    TGAGTCATGT TTTGCCTCAA CTGGCTCTGG ATCCACACAA CAGCCATCTC

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 100.00

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR