F06813

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06813

Determination of introduced cDNA(s)

  • RAFL04-16-L01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-L01 - Resource: pdz87399

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-16-L01 - 5 prime EST 
    ATGTCTCTTG CATCCCAAAT ACAAGTCGTC TCGTTCAAGC ACATATGAGA 
    AGAATGGAAA AGCNTGCCGC AATTCATTAC NGGCACTGGA GCAATTGCTG 
    GTTTTTTTAG TAATGATGCT GTCACAGTTG GCGATTTAGT TGTCAAGGAT 
    CAGGAGTTTA TCGAGGCAAC CAAGGAGCCT GGTATAACAT TTGTTGTAGC 
    TAAATTTGAT GGTATCCTTG GTCTTGGATT CCAAGAGATC TCTGTTGGAA 
    AAGCTGCTCC TGTTTGGTAC AACATGCTCA AGCAAGGCCT TATCAAGGAG 
    CCGGTTTTTT CATTTTGGCT TAACCGTAAT GCAGATGAAG AAGAAGGTGG 
    TGAACTTGTA TTTGGAGGTG TTGATCCAAA TCATTTCAAG GGCAAACATA 
    CATATGTTCC TGTGACACAA AAGGGCTACT GGCAGTTTGA CATGGGTGAT 
    GTTCTTATTG GCGGTGCACC CACTGGGTTC TGTGAAAGTG GCTGTTCTGC 
    GATAGCAGAT TCTGGTACAT CTTTGCTTGC CGGTCCAACG ACTATNATCA 
    CCATGATAAA CCATGCTATT GGAGCAGCTG GAGTTGTTAG CCAGCAGTGC 
    AAGACTGTTG TGGATCAATA CGGGCAGACC ATTTTTGGAT TTACTTTTGT 
    CTGAG

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 99.39

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-16-L01 - 3 prime EST 
    GGAGATAAAG CGAGCTTGAC CATTTTCAAA TTTTTTATGC TACACCGTTT 
    TTACCGAACC ATTTGATACA ACTTACTAAG CATAAACAAA AGAGGCAGGC 
    TTTATTAAAG TTTTCAGTTT TTTCACCATC GAACTTACTT AGAAGGTATT 
    TACAAAGCCA ATGCCTTCAA AACTACAAAG GCCTTTTTTC GTTAGGAAAC 
    AACTTAAAAG GAACTGCGCC ACCATTTCTA CTACGACTCA AAGTCCTCAA 
    CTCCAGAAAA CATACAAACA ACACTTGAGA CGCAGATTGT TCATACTAAA 
    ACCATACGCG ACACCAACCC GATCGTGTTT AGGCTGCCTC TGCAAACCCG 
    ACCTGTTCGT TACCAAAGTC AAATACGGTG TGGTATTTGC CCATGAACAC 
    ATCTCCCAAG ATCCAGAGAG GTCCACGAGG TGGAGCAACG TCAAGAGCAA 
    TAAAACCACT GATGCACTGT GCCACAGGTC CCTCACCAAC TTTCAGAACA 
    TACTCTTCTG GAGCAAGATC AAATACTTTG CCTCCAATGG TAAGTGAAAC 
    AGTGGGCATT GTTGACAGTT GTGCACAGTC AACTGCAGAC TCTCCCATTG 
    GGCTGGGGAG GCGTTCACAT AGCTCGTTGA CGTAGTTCAA TATGCGCTCT 
    TGAGTCATGT TTTGCCTCAA CTGGCTCTGG ATCCACACAA CAGCCATCTC

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 100.00

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR