F06818

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06818

Determination of introduced cDNA(s)

  • RAFL06-76-A03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-76-A03 - Resource: pda03589

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-76-A03 - full reading 
    ATCACAAAAC TTGCAAGTAT CATTCACAGG AGAGGGAAGG GAGAGCTCAT 
    CATACGAAAT GAGGTCAATC ACAGCTTTGT TTTTCCTTTT CTGTTTCCTT 
    GCTCCTTCTG CTTTGGCGCA GCTCCGAACT GGGTTCTACA GCCGCTCATG 
    CCCCCGTGCC GAATCTATCG TGGCTAGTGT TGTTGCCAAC CGTTTCAGAA 
    GTGACAAGTC CATTACTGCA GCATTTCTTC GTATGCAGTT TCATGATTGC 
    TTTGTCAGGG GTTGTGATGC TTCCCTCTTG ATCGACCCAA GACCTGGAAG 
    GCCATCAGAG AAAAGCACTG GACCAAATGC AAGCGTGAGA GGCTACGAGA 
    TCATTGATGA GGCTAAGAGA CAGCTCGAGG CTGCATGTCC CCGAACTGTC 
    TCATGCGCAG ACATTGTAAC TCTTGCCACA AGAGACTCGG TCGCATTAGC 
    TGGTGGTCCA AGGTTCTCAG TACCAACAGG AAGACGTGAT GGATTAAGGT 
    CAAACCCCAA TGATGTGAAC TTACCCGGAC CAACAATTCC GGTTAGCGCA 
    TCTATCCAAT TGTTTGCAGC TCAAGGTATG AATACCAACG ATATGGTTAC 
    ACTTATTGGT GGTGGCCACA GCGTCGGTGT TGCACATTGC AGTCTCTTCC 
    AGGACAGGCT TTCCGACCGT GCAATGGAAC CCTCATTGAA GTCTAGCTTG 
    AGGAGGAAAT GCAGTTCCCC TAACGACCCA ACAACGTTTT TGGACCAAAA 
    GACTTCATTT ACTGTGGATA ACGCAATCTA TGGAGAGATC CGAAGACAAA 
    GAGGAATTCT AAGAATTGAT CAAAACTTGG GTCTTGATAG ATCAACCAGT 
    GGGATTGTGT CTGGTTATGC ATCAAGCAAT ACACTCTTCA GAAAGAGATT 
    TGCCGAAGCA TTGGTGAAAA TGGGTACCAT TAAGGTTCTT ACCGGACGTT 
    CTGGAGAGAT CAGGAGAAAC TGCAGAGTCT TCAACAACTG AGGACGTTGA 
    TTCTTGCACA CATTCTTTAC AATTATTCAC GGAGAGATCC AAAGACTGAG 
    CGGAATCCTA CGTTTTTTCT TTTCTTTGCT TTTTTTCTTA CAAATCAAAT 
    CGGAAAGTGT GTTTGTTCCG GTATCATGTT TTATTTTTCC CTAAAAATTG 
    ATTCGCGTGT TTCATTTTCA TGAACTATAT ATTGTTCTAA T

    Gene models with high sequence identity

    1. AT4G26010.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Plant peroxidase 5.1e-45
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
    ProfileScan Haem peroxidase, plant/fungal/bacterial 73.378
    HMMPfam Haem peroxidase, plant/fungal/bacterial 9.8e-67
    Gene3D no description 1.9e-54
    superfamily Haem peroxidase 4.9e-98
    PatternScan Peroxidase, active site 0

    See the detailed result >

    AT4G26010.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G34510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR