F06825

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06825

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06825

Determination of introduced cDNA(s)

  • RAFL09-16-P08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-P08 - Resource: pda02001

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-P08 - full reading 
    AATCATTTGA TTATTTCCTC CTCTCCGTAT CTGTGTCTCT CTTCTCTTGA 
    TCTTTTAGTG TTCTTGCTTT GTCGCTTCAA CGCTTAAGTT TGGATTTGTG 
    TGAGTCTGCA TAATCATGGC GAGGAAGATG CTTGTTGATG GTGAGATTGA 
    TAAGGTGGCG GCTGATGAAG CCAACGCGAC GCACTATGAT TTTGATTTGT 
    TTGTCATCGG TGCCGGGAGT GGCGGTGTTC GTGCTGCTAG GTTTTCGGCT 
    AATCATGGCG CTAAGGTTGG TATTTGTGAG CTTCCATTTC ACCCTATTAG 
    CTCTGAGGAG ATTGGAGGCG TTGGTGGAAC CTGTGTTATC CGTGGTTGTG 
    TTCCTAAAAA GATTCTCGTC TATGGAGCTA CTTACGGTGG TGAACTTGAG 
    GATGCTAAAA ATTATGGGTG GGAAATAAAT GAGAAAGTCG ACTTCACATG 
    GAAGAAGCTT TTGCAAAAGA AGACTGATGA GATACTAAGA CTGAATAATA 
    TCTACAAGCG GTTATTGGCA AATGCTGCGG TGAAATTGTA TGAAGGTGAA 
    GGAAGAGTAG TTGGTCCCAA CGAAGTGGAG GTGAGACAAA TAGATGGCGC 
    AAAAATAAGT TATACCGCAA AGCACATATT GATTGCCACT GGCAGTCGGG 
    CGCAAAAGCC TAATATTCCT GGACATGAGC TGGCTATTAC ATCTGATGAA 
    GCTTTGAGCT TGGAAGAATT TCCCAAGCGT GCTATAGTGC TTGGAGGAGG 
    GTATATTGCT GTGGAGTTTG CATCAATATG GCGTGGAATG GGTGCTACTG 
    TAGATTTATT CTTCAGGAAG GAACTTCCGC TAAGGGGTTT TGATGACGAA 
    ATGAGGGCAC TAGTTGCTAG AAATCTTGAA GGAAGGGGCG TTAATCTGCA 
    TCCACAAACA AGTTTGACTC AGTTGACAAA AACAGACCAG GGGATCAAAG 
    TCATATCGTC CCATGGGGAG GAATTCGTGG CAGATGTCGT CCTATTTGCT 
    ACTGGCAGAA GTCCTAATAC CAAAAGATTG AATTTAGAAG CTGTTGGTGT 
    TGAACTTGAT CAGGCTGGAG CTGTGAAGGT TGACGAGTAT TCACGAACTA 
    ATATACCTAG CATATGGGCT GTAGGAGATG CCACAAACCG AATTAACCTT 
    ACACCTGTTG CGTTAATGGA GGCCACCTGT TTTGCGAACA CTGCTTTTGG 
    TGGAAAGCCT ACTAAAGCAG AATACAGCAA TGTCGCCTGT GCTGTATTTT 
    GCATACCACC ACTAGCTGTA GTGGGTCTCA GCGAAGAAGA AGCAGTAGAA 
    CAAGCAACCG GTGATATTCT GGTCTTCACC TCAGGCTTTA ATCCAATGAA 
    GAACACCATT TCTGGACGCC AGGAAAAGAC ATTGATGAAG CTAATAGTTG 
    ATGAGAAGAG TGATAAGGTT ATTGGAGCAT CCATGTGCGG TCCTGATGCA 
    GCTGAGATCA TGCAGGGGAT TGCAATTGCG CTCAAGTGTG GAGCAACCAA 
    AGCACAATTT GATAGCACGG TTGGGATACA TCCATCTTCT GCAGAGGAAT 
    TTGTGACAAT GCGCAGTGTG ACCAGACGCA TTGCCCACAA ACCCAAACCT 
    AAGACAAATC TATGAACCGC AAAATATAAA GAGCTATATA GCATGAAAAC 
    TCGGTACACT TAATTTGATC AAAGAGTCAG ACAACGATGA GTTTAATCAT 
    ACTCGTGTCC CAATAAAGGA TTTGTAATTT TTGTTTGTTT GTATGATGCT 
    TCTCTTCTTA CTTACTTGAG AAAACATCAA GGTTTCTTCT CTTATTGCTT 
    AGTGGAACTT TATTACAAAG AATTATTCTA CGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT3G24170.1 [+] show detail - glutathione-disulfide reductase
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Pyridine nucleotide-disulphide oxidoreductase, class I, active site 0
    superfamily FAD/NAD(P)-binding domain 1.5e-66
    superfamily FAD/NAD-linked reductase, dimerisation 1.6e-31
    HMMTigr Glutathione-disulphide reductase 0
    HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 5.9e-46
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation 6.7e-30
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 1.5e-16
    HMMPanther GLUTATHIONE REDUCTASE 1.2e-260
    HMMPanther DISULFIDE OXIDOREDUCTASE 1.2e-260
    Gene3D no description 1e-65
    Gene3D Pyridine nucleotide-disulphide oxidoreductase, dimerisation 1.7e-31
    Coil coiled-coil 0
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan Mercuric reductase 3.4e-05
    FPrintScan Mercuric reductase 3.4e-05
    FPrintScan Mercuric reductase 3.4e-05

    See the detailed result >

    AT3G24170.1

    Model type
    Protein coding
    Short Description
    glutathione-disulfide reductase
    Curator Summary
    Encodes a cytosolic glutathione reductase.
    Computational Description
    glutathione-disulfide reductase (GR1); FUNCTIONS IN: NADP or NADPH binding, glutathione-disulfide reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction, glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: glutathione reductase (TAIR:AT3G54660.1); Has 36408 Blast hits to 36344 proteins in 3180 species: Archae - 854; Bacteria - 26624; Metazoa - 911; Fungi - 472; Plants - 667; Viruses - 0; Other Eukaryotes - 6880 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR