F06835

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06835

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06835

Determination of introduced cDNA(s)

  • RAFL06-69-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-E15 - Resource: pda03322

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-E15 - full reading 
    AACGAATAAG AAAAGAAGAG AAACATCAAA CATCTTTGGT TTGCTTCCCT 
    CGTACCCGTT CTTCATACAA GCACGCCTTT AATTATGGAT TGTCATAGAA 
    AGACGTTCTT GTTGAAGTTT TTGTGCGTGG CATTTCTGTT AAACTACAGC 
    AATGTTGGCT TTGTAGACGC AGCAACAAAC ATTGGCTTGA ACTACGGCCT 
    CCTTGGAGAC AACCTCCCGC CTCCATCTGA AGTTATCAAC CTCTACAAGT 
    CCTTAAGTGT TACCAATATT CGGATCTTCG ACACAACTAC GGATGTCCTT 
    AACGCCTTTC GAGGGAATCG CAATATCGGA GTTATGGTAG ACGTGAAGAA 
    CCAAGACTTA GAGGCTCTTT CGGTCAGCGA AGAAGCTGTT AACACCTGGT 
    TCGTGACCAA CATTGAGCCT TACTTAGCTG ATGTCAACAT CACGTTCATT 
    GCTGTCGGGA ACGAAGTCAT CCCAGGGGAA ATCGGCTCTT ATGTGCTACC 
    CGTCATGAAA TCTCTCACCA ACATTGTCAA GTCGAGGAGT CTCCCGATCT 
    TGATCAGCAC CACGGTGGCT ATGACCAACC TTGGCCAGTC ATATCCACCT 
    TCGGCCGGAG ATTTCATGCC TCAAGCACGT GAACAACTTA CCCCGGTGCT 
    GAAGTTTTTG TCTCAAACAA ATACGCCTAT CCTCGTCAAC ATCTACCCCT 
    ACTTCGCATA TGCTGCTGAT CCTATCAACA TTCAGCTCGA CTATGCCATC 
    TTCAACACCA ACAAGGTCGT GGTCCAAGAC GGGCCACTTG GTTATACAAA 
    CATGTTCGAT GTGATATTTG ATGCGTTCGT ATGGGCAATG GAGAAAGAAG 
    GTGTGAAGGA TTTACCAATG GTGGTAACAG AAACTGGATG GCCATCTGCT 
    GGTAACGGAA ACTTAACGAC TCCAGATATC GCATCTATAT ACAATACCAA 
    TTTTGTTAAA CATGTGGAAA GCGGTAAAGG GACGCCAAAG AGACCAAAGA 
    GTGGCATTAG TGGATTTCTA TTTGCGACGT TCAATGAGAA TCAAAAGCCA 
    GCGGGAACCG AACAAAATTT TGGGTTATAT AATCCAACAG ATATGAAGCC 
    CATCTACAAG ATGTTTTGAT TTTTAGATTC TTGATTTTAT AGACTATCCC 
    AAATCATTAG TAAATTAATG ATGCTCTAAT AGTTGTAATA GAGCGGGATA 
    AAATCAAGAT CTACAACAAC ATTCATTTTA TATGTTGTAT GATCTTCTTA 
    AATAAAAAAA CTTAAGAAGC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G20390.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, family 17 0
    superfamily Glycoside hydrolase, catalytic core 2.4e-93
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.8e-97
    HMMPfam Glycoside hydrolase, family 17 1.6e-95

    See the detailed result >

    AT5G20390.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2108 Blast hits to 2093 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 2096; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR