F06922

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06922

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06922

Determination of introduced cDNA(s)

  • RAFL17-19-N04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL17-19-N04 - Resource: pda10577

    full reading [+] show sequence

    Nucleotide sequence: RAFL17-19-N04 - full reading
    ATCGTTTAAG CTAAAACTCA ACGAGACGAC AGACGATAAA AAGGGATTAA 
    GTTTCTTCTG TGTAGATTAT TCTTCTTCTT CTTCTTCTTC CATTGTCTCT
    TGGGTTGAGA TTCCGATCTC AATGTCGATC AATATCGGAG AAATCTCAAT
    TCCAGACCTT CCTATCTTCT TCTCCATGTT CTTAACCATC TACCTAATCG
    CTTACTTCAT CGTCTTCCGC AATTGGAAAC CACAAATCCG TCCCGAAGCT
    TCAAGCTGCC TGATCTCAAT CTTCCATGGA TCTCCAGCGG TTTTCCTCGC
    CACACGCGCA GTTTTCTCCT CCTCCGAACG CTCCTTCGCC TCCGCAAACA
    CCGCCGCACA AAACACCGTC CTCGATTTCA GCGTCGCTTA CTTCCTCACC
    GATCTCTTCC ACTACATCGT CTTCAACCCT AACGACGTAC TCTTCATCGG
    CCATCACGTA GCCACTCTAT TCGTCTTCCT AACCTGCAGA TTCCTCGTCT
    TCCACGGGGC TTGCGCCATC TTAGGCCTCC TGATTCTAGC TGAAGTAACA
    AGCGCGTGTC AGAACGCGTG GACGCTCGCC GGAGCAAGGA AGAATGATCC
    GGAATCACGA TTAGCTGTGA AAGTGTACGA TCTCTTGTCT CCTCCGTTTT
    ACGCCTTCTA CAGTATCGTT AGGGGTGTGT TGGGACCTTT GTTTTTCGGG
    AAAATGGTAG CGTTTTACGC TCGAGGTGGT GCTCATGGTG TGATACCTAA
    TTGGTTGTGG ATTTCTTGGG CAATTGTTGT TGGAATTGCT ATTACTGTTA
    GTATACTTTG GATTTGGAAT CTCTGGATAG AATTGTTTAG TGAAAGGAAA
    GCTAACAAAA TCAGAGTAGA CAAGAAAATT AGATAGTTTC TTCTTTCTTC
    TCTAGATCAT TGTTTGATCT TCCTTTTCAT GTACTATATA TAATATATAT
    ACCATTATTA TTCTCACCTT TTAGAATTCC TCTAAATGAT GTATGTTTTG
    GAATAATAGA TTTGCTTTTG GGT

    Gene models with high sequence identity

    1. AT5G14280.1 [+] show detail - DNA-binding storekeeper protein-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TRAM/LAG1/CLN8 homology domain 2e-17
    HMMSmart TRAM/LAG1/CLN8 homology domain 1.6e-43
    ProfileScan TRAM/LAG1/CLN8 homology domain 9.581

    See the detailed result >

    AT5G14280.1

    Model type
    Protein coding
    Short Description
    DNA-binding storekeeper protein-related
    Computational Description
    DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G27270.1); Has 335 Blast hits to 330 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 315; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR