F06933

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06933

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06933

Determination of introduced cDNA(s)

  • RAFL06-07-K18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-K18 - Resource: pda02847

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-K18 - full reading
    GAGAAACCAC AAATCTCTCT TTCTCTCAAA CTCTCTCAAC AACAACAATG 
    GCGTCTCTTC AACAAACTCT ATTCTCTCTT CAATCCAAAC TCCCACCATC
    CTCCTTCCAA ATCGCCAGAT CTCTCCCACT CCGAAAAACC TTCCCAATCC
    GAATCAACAA CGGTGGAAAC GCCGCCGGAG CAAGAATGTC AGCCACCGCA
    GCATCAAGCT ACGCGATGGC ATTAGCAGAC GTCGCGAAAA GAAACGACAC
    AATGGAATTA ACAGTCACAG ACATCGAGAA GCTCGAACAA GTCTTCTCAG
    ATCCACAAGT ACTAAACTTC TTCGCGAATC CAACAATCAC CGTCGAGAAG
    AAACGTCAAG TCATCGACGA CATAGTGAAA TCGTCGTCTC TTCAATCTCA
    CACATCTAAC TTCCTCAACG TCCTCGTCGA CGCGAATCGG ATCAATATCG
    TGACGGAGAT CGTTAAGGAG TTTGAGTTGG TTTACAATAA GCTAACGGAT
    ACACAATTGG CGGAGGTTAG GTCGGTGGTG AAATTGGAAG CGCCGCAATT
    AGCTCAGATT GCGAAACAGG TTCAGAAGTT AACCGGAGCT AAGAATGTTC
    GGGTTAAGAC GGTTATTGAT GCGAGTCTTG TGGCTGGTTT TACGATTCGG
    TATGGTGAAT CCGGTTCGAA GCTTATTGAT ATGAGTGTGA AGAAACAGCT
    TGAAGATATT GCTTCTCAGC TTGAACTTGG TGAGATTCAA TTAGCTACTT
    GAGATTTGGG AAAAATTGTA TAAGAGAAAA ATTTGAGAAT CTTTTTTTTT
    TGTGCAAGTT TAATTTTTTT TCTCAT

    Gene models with high sequence identity

    1. AT4G09650.1 [+] show detail - ATP synthase delta-subunit gene
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase, F1 complex, OSCP/delta subunit 9.6e-44
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    HMMPanther ATPase, F1 complex, OSCP/delta subunit 9.6e-55
    superfamily ATPase, F1 complex, OSCP/delta subunit 3e-22
    HMMTigr ATPase, F1 complex, OSCP/delta subunit 1.5e-31
    PatternScan ATPase, F1 complex, OSCP/delta subunit, conserved site 0
    HAMAP ATPase, F1 complex, OSCP/delta subunit 18.373
    Gene3D ATPase, F1 complex, OSCP/delta subunit 0.000000000000082

    See the detailed result >

    AT4G09650.1

    Model type
    Protein coding
    Short Description
    ATP synthase delta-subunit gene
    Curator Summary
    Encodes the chloroplast ATPase delta-subunit.
    Computational Description
    ATP synthase delta-subunit gene (ATPD); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: response to cold, defense response to bacterium, photosynthetic electron transport in photosystem I, photosynthetic electron transport in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit, conserved site (InterPro:IPR020781), ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 4372 Blast hits to 4372 proteins in 1436 species: Archae - 0; Bacteria - 2635; Metazoa - 155; Fungi - 114; Plants - 153; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR