F06940

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06940

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06940

Determination of introduced cDNA(s)

RAFL09-68-A15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-A15 - Resource: pda06605

full reading [+] show sequence

AGAACAAGTC ACTACAGATC TGAAGTGAAC CAAGCTCAGG TTTTGTCTTC 
TCTTTGATCA TTCCTTTCTC AGCAATATAA ATTAGAGTTA TATCCTTTAT 
AAAGGATTTT GCTTTTTCAC CAACAAACCC TAAATTCGGT GTCTCAGCAA 
GAATCACGTG ATTCTCGTTC CTCTTCCTCA CGAAACCCAT CATCTTCTAT 
CTCATTTGAG AAATGGGTCA AAAGTTTTGG GAGAATCAAG AAGATCGAGC 
GATGGTTGAA TCCACCATAG GCTCTGAAGC TTGCGACTTT TTCATCTCAA 
CAGCTTCAGC TTCCAACACT GCCTTGTCCA AGCTTGTCTC ACCACCAAGT 
GATTCCAATC TCCAACAAGG GTTACGTCAC GTTGTTGAAG GATCTGATTG 
GGATTATGCT CTTTTCTGGC TAGCGTCCAA CGTTAATAGC TCTGATGGTT 
GTGTCTTGAT CTGGGGAGAT GGTCATTGCC GTGTCAAAAA GGGTGCTTCA 
GGTGAGGATT ACTCTCAGCA AGATGAGATC AAAAGACGTG TGCTTCGCAA 
GCTTCACTTG TCGTTCGTTG GTTCAGATGA AGATCATCGT TTGGTGAAAT 
CAGGAGCTCT TACTGATCTC GACATGTTTT ACCTGGCTTC TTTGTACTTT 
TCCTTTAGGT GTGATACCAA TAAGTACGGT CCTGCTGGAA CCTATGTGTC 
TGGGAAGCCT CTTTGGGCTG CAGATTTGCC TAGCTGCTTG AGTTATTATA 
GGGTTAGGTC TTTCTTAGCT AGGTCAGCTG GTTTTCAGAC TGTGTTGTCT 
GTACCAGTGA ATTCTGGAGT TGTGGAGCTT GGTTCTTTAA GACATATTCC 
AGAAGATAAG AGTGTGATTG AGATGGTGAA ATCAGTGTTT GGTGGGTCTG 
ACTTTGTTCA GGCTAAAGAA GCTCCTAAAA TCTTTGGTCG ACAGCTGAGT 
CTTGGTGGAG CAAAACCTCG GTCTATGAGT ATTAATTTCT CCCCGAAGAC 
CGAGGATGAC ACGGGTTTCT CATTGGAATC GTATGAGGTG CAAGCGATCG 
GAGGCTCTAA TCAAGTGTAT GGTTATGAGC AAGGGAAAGA TGAGACATTG 
TATCTAACTG ACGAGCAAAA GCCGAGGAAG AGAGGGAGAA AACCAGCAAA 
TGGAAGAGAA GAAGCTCTAA ACCATGTGGA AGCGGAACGG CAGAGGAGGG 
AGAAGCTGAA CCAGAGATTC TACGCTTTGA GAGCGGTGGT GCCTAACATC 
TCCAAGATGG ACAAGGCTTC GCTCCTTGCA GACGCAATCA CTTACATCAC 
GGATATGCAG AAGAAAATCA GGGTGTATGA AACAGAGAAG CAGATAATGA 
AGAGGAGGGA GAGTAATCAG ATAACTCCAG CAGAGGTTGA TTATCAACAG 
AGGCATGATG ATGCAGTTGT AAGGCTAAGC TGTCCGTTGG AAACTCATCC 
AGTTTCAAAG GTGATACAAA CGTTGAGGGA GAATGAAGTT ATGCCTCATG 
ATTCCAACGT GGCCATCACA GAGGAGGGTG TGGTTCACAC ATTCACTCTC 
CGGCCTCAGG GTGGCTGCAC CGCTGAGCAG TTGAAGGACA AGCTCCTTGC 
CTCTCTATCA CAGTAACTAT CACAGCAGTA ACTGCTATGT AATAAGTGTA 
ACCGTGTTGG AGGTTGTATC AATGTACTAT TGCAAGCCAA CCAAAAAAAA 
CTCCAGCTTA GTAGGATCGT GTAATTTTCC TTATATGTAA TGTTGAGATT 
TGTCTTTTAC ATATAAAGAT TTGAGCAGAA AGCTTCAT

Gene models with high sequence identity

AT4G16430.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
E-value: 0; Score: 99.89

InterPro Scan Digest

Program	Description	E-value
superfamily	Helix-loop-helix DNA-binding	5.1e-17
HMMPanther	CENTROMERE-BINDING PROTEIN 1, CBP-1	2.2e-06
HMMPanther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	2.2e-06
ProfileScan	Helix-loop-helix DNA-binding domain	14.085
HMMPfam	Helix-loop-helix DNA-binding domain	2.9e-10
HMMSmart	Helix-loop-helix DNA-binding domain	1.6e-14
Gene3D	Helix-loop-helix DNA-binding	3.1e-09
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT4G16430.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1); Has 2977 Blast hits to 2635 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 31; Plants - 2859; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR