F07028

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07028

Determination of introduced cDNA(s)

  • RAFL17-19-N04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL17-19-N04 - Resource: pda10577

    full reading [+] show sequence

    Nucleotide sequence: RAFL17-19-N04 - full reading 
    ATCGTTTAAG CTAAAACTCA ACGAGACGAC AGACGATAAA AAGGGATTAA 
    GTTTCTTCTG TGTAGATTAT TCTTCTTCTT CTTCTTCTTC CATTGTCTCT 
    TGGGTTGAGA TTCCGATCTC AATGTCGATC AATATCGGAG AAATCTCAAT 
    TCCAGACCTT CCTATCTTCT TCTCCATGTT CTTAACCATC TACCTAATCG 
    CTTACTTCAT CGTCTTCCGC AATTGGAAAC CACAAATCCG TCCCGAAGCT 
    TCAAGCTGCC TGATCTCAAT CTTCCATGGA TCTCCAGCGG TTTTCCTCGC 
    CACACGCGCA GTTTTCTCCT CCTCCGAACG CTCCTTCGCC TCCGCAAACA 
    CCGCCGCACA AAACACCGTC CTCGATTTCA GCGTCGCTTA CTTCCTCACC 
    GATCTCTTCC ACTACATCGT CTTCAACCCT AACGACGTAC TCTTCATCGG 
    CCATCACGTA GCCACTCTAT TCGTCTTCCT AACCTGCAGA TTCCTCGTCT 
    TCCACGGGGC TTGCGCCATC TTAGGCCTCC TGATTCTAGC TGAAGTAACA 
    AGCGCGTGTC AGAACGCGTG GACGCTCGCC GGAGCAAGGA AGAATGATCC 
    GGAATCACGA TTAGCTGTGA AAGTGTACGA TCTCTTGTCT CCTCCGTTTT 
    ACGCCTTCTA CAGTATCGTT AGGGGTGTGT TGGGACCTTT GTTTTTCGGG 
    AAAATGGTAG CGTTTTACGC TCGAGGTGGT GCTCATGGTG TGATACCTAA 
    TTGGTTGTGG ATTTCTTGGG CAATTGTTGT TGGAATTGCT ATTACTGTTA 
    GTATACTTTG GATTTGGAAT CTCTGGATAG AATTGTTTAG TGAAAGGAAA 
    GCTAACAAAA TCAGAGTAGA CAAGAAAATT AGATAGTTTC TTCTTTCTTC 
    TCTAGATCAT TGTTTGATCT TCCTTTTCAT GTACTATATA TAATATATAT 
    ACCATTATTA TTCTCACCTT TTAGAATTCC TCTAAATGAT GTATGTTTTG 
    GAATAATAGA TTTGCTTTTG GGT

    Gene models with high sequence identity

    1. AT5G14280.1 [+] show detail - DNA-binding storekeeper protein-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TRAM/LAG1/CLN8 homology domain 2e-17
    HMMSmart TRAM/LAG1/CLN8 homology domain 1.6e-43
    ProfileScan TRAM/LAG1/CLN8 homology domain 9.581

    See the detailed result >

    AT5G14280.1

    Model type
    Protein coding
    Short Description
    DNA-binding storekeeper protein-related
    Computational Description
    DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G27270.1); Has 335 Blast hits to 330 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 315; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR